1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtgtctgacacttgattgtttatcttactggtttttggaagtctaattagcaagttcttgtcggttgtgtcgaatgaatttagattccctcagctgtgatgagggccattcttgccttgtgctcaacaatacatttgtgttctatgctcttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
species | Physcomitrella patens |
transcript | PP1S62_239V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGAT GCTGTCGCAGAGGACTACAATGAGCCTGAGGATGEST: gi|162211735|gb|FC387399.1|FC387399
genomic: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGATgtaggtgtct ... cttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
EST: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGAT GCTGTCGCAGAGGACTACAATGAGCCTGAGGATGEST: gi|162272699|gb|FC448325.1|FC448325
genomic: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGATgtaggtgtct ... cttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
EST: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGAT GCTGTCGCAGAGGACTACAATGAGCCTGAGGATGEST: gi|162211734|gb|FC387398.1|FC387398
genomic: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGATgtaggtgtct ... cttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
EST: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGAT GCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
genomic: GTTTGTCAGGTGTTGCGCAACTTGATGGTATTGACGACGAATATGATGATgtaggtgtct ... cttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
ggccattcttgccttgtgctcaacaatacatttgtgttctatgctcttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
tgctctt CT-rich tract
aatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgtctgacacttgattgtttatcttactggtttttggaagtctaattagcaagttcttgtcggttgtgtcgaatgaatttagattccctcagctgtgatgagggccattcttgccttgtgctcaacaatacatttgtgttctatgctcttataccagGCTGTCGCAGAGGACTACAATGAGCCTGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG