1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttctgattcaatttcgttttctttttttccgtttttgtatcttttgtcatggattttttgatttcaagaattcaccttcattgctttccacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACCATGCACGCAAGACG
species | Physcomitrella patens |
transcript | PP1S62_116V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGACCAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAG ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACEST: gi|37825564|gb|BJ583630.1|BJ583630
genomic: ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAG ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACEST: gi|162165647|gb|FC341486.1|FC341486
genomic: ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: AACCGGTTATGATGAG ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACEST: gi|208396622|gb|DC920358.1|DC920358
genomic: AACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: GTTATGATGAG ACCCGTTATTTGCTTCAACCAGAACNTGTGTTGGAGGACGTTAGTCAAGAC
genomic: GTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
ttgtcatggattttttgatttcaagaattcaccttcattgctttccacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACCATGCACGCAAGACG
ttttgat putative branch site (score: 4)
ccttcattgctttcc putative PPT
attttttgatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttctgattcaatttcgttttctttttttccgtttttgtatcttttgtcatggattttttgatttcaagaattcaccttcattgctttccacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGACCATGCACGCAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA