1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgacgcactattgatttagatattgtcgtttatttctgtttttgtaacttgtattatatgttacaataataatcttacaatgtcacggtcgtgcgatatgcgcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTTCGAATGACGAACAGAAGTGGGGACTCTTCATAGCCTACAAGGCATTAT
species | Physcomitrella patens |
transcript | PP1S60_199V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAG GAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTEST: gi|162246139|gb|FC424433.1|FC424433
genomic: TAGCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAGgtaatgacgc ... gcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGT
EST: GCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAG GAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTEST: gi|162231470|gb|FC407920.1|FC407920
genomic: GCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAGgtaatgacgc ... gcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGT
EST: TAGCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAG GAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTEST: gi|162246138|gb|FC424432.1|FC424432
genomic: TAGCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAGgtaatgacgc ... gcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGT
EST: GCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAG GAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGT
genomic: GCCACCACTGAAGCAGGTCGTGACCAGTTCATCAACGATTTCTCCGAGgtaatgacgc ... gcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGT
tatgttacaataataatcttacaatgtcacggtcgtgcgatatgcgcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTTCGAATGACGAACAGAAGTGGGGACTCTTCATAGCCTACAAGGCATTAT
atcttac putative branch site (score: 3)
aataataatcttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgacgcactattgatttagatattgtcgtttatttctgtttttgtaacttgtattatatgttacaataataatcttacaatgtcacggtcgtgcgatatgcgcttatgcagGAGGATTATAACTACATTGTGAGCGGATGGAAGAGTAAGCTGAAGCGCTGTTCGAATGACGAACAGAAGTGGGGACTCTTCATAGCCTACAAGGCATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT