ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA

Basic information

species	Physcomitrella patens
transcript	PP1S60_100V6.1
intron #	8
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgat-gctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                    ||  | |  ||   || ||      |||||| |     ||| |  || | | | ||   ||   | || ||  | ||     || ||||| ||||| || || ||  | || |||||||||||||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| 
------------------------------------gtaacatttttctatgatgtcctaaactgtt-ctctcctgtgaccattgatcttgacaataacatgtttagtcatagcgccttg-cagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                             |   ||     |||   |  |  ||  |    |    |  ||| |  |   |  || | |    |  | || |  |||||  |||| || || || || |||||||| ||||||||||| || || ||||| ||||| || |||||||||||||| ||||||||||||||||| 
--------------------------------------------gtaaattatatcttgcttccat--cgaaatcactccctttttgttgtttacctcctacttaactgac-tattctctcagGTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
           |  |     | | | || | |  |  |    | ||    ||  | ||    || ||     ||     | |||| |  || |   |||  || |       ||      |||||  |||| || || ||  | || || |||||    ||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| 
-----------gtaacatctgatttagtttagtggaatattattcta---tgtagtttcccccttttcttttagc----tcatgcaggagacttactgtacttca-------tt------cagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagt-tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                   | | | |    | || |    | ||     ||||| |  ||||  || |    | ||| | |   ||| |     |       | ||||||  | || ||||| ||  | ||||| || || ||||||||||| ||||| || |||||||||||||| || || || || |||||||||||||| 
-----------------------------------gttagtgccaattctggtgtttagttggccttgcgagt-tgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os02g14130.1 (Oryza sativa), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtact-tgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                     ||  | ||||      ||   |||  | | ||| |  |        |     | |||| |  |  | |      ||   |            |||  ||| ||||  | || || || || |||||||| |||   ||||||||||| |||||||| || ||||  ||||| || || || ||||||||||||||||| 
---------------------gtagtatgttaggcactgctctacagtacatgcggtctaaagaaaatttcttaatgtttttctatttt----cataaactgaatgaattttctttgttggtagGTTCTTGGTACTCCAACACGTGAGGAAATCCGCTGCATGAATCCCAACTACACAGAATTCAGATTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G075992_T01 (Zea mays), 3'ss of exon 5

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA----
                                     | | | ||||  ||     |||    | | ||  |   ||||  |   | |  |||  |  | || ||||   | |||| |  |||||  | || || || || || || || || ||| |||||||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||    
---------------------------------gtaatagtg-acttcttt--caattgaagatttagcttgctagttac-acatt-tccagttgac-tcatggaggcttatttttctttcagGTTCTAGGTACTCCAACACGGGATGAAATTAAGCGCATGAATCCAAACTACACCGAATTTAAGTTTCCGCAAATCAAAGCTCACCCATGGCACAAAGTAA

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G138676_T02 (Zea mays), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgc-----tgtggagtgtatgttattgaggaaaagttt-----tgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                    |||   | ||| |    |   | ||||  |  |   | |||| || |||     | || |   |    |||||||| | ||  |     | | |||||| ||||| || || ||  | || ||||||||||||||||| || ||||| |||||||||||||| || ||||| || ||||| || |||||||| 
------------------------------------gtgattttcttacggtatccatatgaccatatctctactgttttgctgccttcttttgcaccatgacatattgaggcatagcatctgcatcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM5G835235_T02 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgt-tgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA----
                                    ||  |    || |    | ||    ||| | | | | |  |  || |   | | ||    |  | |||      |  ||   | ||||||  | || || || ||  | || || || || |||||||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||     
------------------------------------gtatcaattttacaaatttgtaa--actatcttctgcatagacataaa--ttttgatcacacttgatttg----attttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGGTGT

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM5G835235_T04 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgt-tgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                    ||  |    || |    | ||    ||| | | | | |  |  || |   | | ||    |  | |||      |  ||   | ||||||  | || || || ||  | || || || || |||||||| ||||| ||||| ||||| ||||| || |||||||| ||||||||||||||||| 
------------------------------------gtatcaattttacaaatttgtaa--actatcttctgcatagacataaa--ttttgatcacacttgatttg----attttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgt-ggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                                 ||||    |||  |   |   | | |  |||    |||  |    ||   ||||||        | |    | ||||  | || || || || |||||||||||   |||||||||||| ||||| || ||||||| |||||| || || |||||||| ||||||||||| 
----------------------------------------------gtattgcaaaatgttccaaata--gaaattctattcctctgccgcgacgttacttattggtatgtgatatgcctgtagGTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G155836_T01 (Zea mays), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                               | |   |    |  |||    | | ||   |||  |||   |  |||    | |     | |  || | ||             | |  |||||  |||| ||||| || ||||| || || |||||||||||||| || || || ||||| || || ||||||||||| |||||||||||||| || 
-------------------------------gtaaactactatctttgtc--ccgatta-aactcctgcat-atcgttgctttacctccaatttaatctcatc-----------ctctctcagGTTCTGGGCACACCCACACGTGAAGAAATTAAGTGCATGAATCCAAATTATACCGAGTTTAAATTCCCGCAAATCAAAGCTCACCCATGGCATAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G151916_T01 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggt-gttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
               | |  ||| ||| || |||  |      || | | |     |   ||  |   |  ||  | || |  | |  || | || |||   |||        |||  || |||||  | || || || || |||||||| |||   || |||||||| |||||||| ||||| |  ||||| || ||||| ||||||||||||||||| 
--------------gtacttggttgttctgctgactg-cactatattagttctaaagaaatgtgttaagtagggtttttctatttccatgtattgaatggatttgc-------tttgctgacagGTTCTTGGTACTCCAACACGTGAGGAAATCCGTTGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G121790_T01 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtac-ttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                | ||   || ||  || ||  ||   ||  ||  |||             |  |  | || || |  | |  || | || |||   |||        |||  || |||||  | || || || || || ||||| |||   || |||||||| |||||||| ||||| |  ||||| || ||||| ||||||||||||||||| 
----------------gtacttggtggttctgcagactgcactatattagttgtaaagaaatgtactacctagtgttttctatttccatgtattggatggatttgc-------tttgctgacagGTTCTTGGTACCCCAACGCGCGAGGAAATCCGATGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G472625_T01 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgt-ggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                         |||||     ||    |||  |    |  |   |  |||  | ||   || |||| | |||| |        | |    | ||||  | || || || || |||||||||||    ||||||||||| ||||| || ||||||| |||||| || || |||||||| || |||||||| 
-----------------------------------------gtact-----gcaaaatgtt-ccaaagtagacattctattcttctaccggggtgtttcttatggttatgtgatgtgcctgtagGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgta--tgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                         ||| |||   | |      |  |||     |  |  |||       |  | | |         | |    |  || | ||||||||  | || || || ||  | || || || || |||||||| || || ||||| ||||| ||||| || |||||||| || |||||||||||||| 
-----------------------------------------gtaattgtcggttctacaagcttgtgaattgtcttctatagaagcataaaatctgatcacccctaaaatgattttgtatggcagGTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgt-ggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA----
                                         |||||     ||    |||  |    |  |   |  |||  | ||   || |||| | |||| |        | |    | ||||  | || || || || |||||||||||    ||||||||||| ||||| || ||||||| |||||| || || |||||||| || ||||||||     
-----------------------------------------gtact-----gcaaaatgtt-ccaaagtagacattctattcttctaccggggtgtttcttatggttatgtgatgtgcctgtagGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGGTAT

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G129482_T01 (Zea mays), 3'ss of exon 3

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgta--tgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                          ||    |        ||| ||      |         |||        |  |     |   |  | | |        ||||    |  ||   | ||||||  | || || || ||  | || || || || |||||||| ||||| | ||| ||||| ||||| || |||||||| || |||||||||||||| 
-------------------------cgtagaaatcatcaaggtagttatcaattttacaaatttgtaaactatcttctgcatagacataaattttgatcacgcttgatttgattttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTGCACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA10G01280.1 (Glycine max), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                    |   |||  ||      |  |   |||| |||  | |  | |   | |      ||||||  |    |       | |   |    ||      ||    ||||| || || || || ||  | || || ||||||||||||||||| || || || |||| ||| ||||| ||||| || ||||||||||||||||| 
-------------------tgtgattgcattttctcttaactagcttgtttgtagatattcataatagttcccttgttatcttttcatacttctgaagaggtctgtgattcacatt----cagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 9

gtagggca-caggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
|||      || | | |   | |  |  |||      ||       |    |  |  ||   |  |||| |   |   |       | |  | | |  | | |        | || | |   || | ||||| ||||| ||  | || || || | |||||||||||| |||||||  || || |||||||| || ||||| ||||||||||||||||| 
gtacattttcatgtgttcttcagaatactgtccccttgttttactttatgatcatactttccaaagttgtgttcggtctgcttatttcttcaatctgagctttcattatgtacttctat---agATTTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtactt-gcttgctggttgtgactgttgcgggagtgttatgatg------ctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
     | |||     |    | | || |||  |  | |  | |  || ||||  || |      |      |  ||||| ||          | |  | | |  | | ||       | || | |   |||| ||||| ||||| ||  | || || || | |||||||||||| |||||||  || || |||||||| || || || ||||||||||||||||| 
-----gtacattttttttgtgttcttctgtatactgttcccttgttttgctttatgatcagactttccaaagttgtgttctgtctacttatttcttcaatctgagcttttattatgtacttctat---agGTCTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttt-tgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                         ||||||     ||| |      |||| |   |    | |  |  | |  | | ||     ||    |   ||   | |  ||| |  | ||||| || ||  | || || ||   ||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||||| 
-----------------------------------------gtacttaac--ctgatccctcgtgttccttcatctctcttcta-tatttaatttactagtttactcatctgtacatctaccagATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
               |   | || | |     |   ||  | |  | | |||||   | ||| | | | || |   ||    | ||        ||| | |||       |  | |   |||||| || || ||||| ||  | || || ||||||||||||||||| ||||| || || || ||||||||||| || ||  |||| ||||||||||| 
-------------cgtattcagtatagaagaaagcagtaacct-ttggattgctcagtctgatt-tcgaggaaaccttggttttct--------tatttcatttgctttgatatgtcatgcagGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 10

------------------------------------------gtagggcacaggcgatgcacggtgttg-tgttgaagggtggcgtacttgcttgctggttgtgactgttgcg-ggagtgttatga-------tgctgtggag--tgtatgttattgaggaaaagttttgtg--------gcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                            |  | | | |  ||     | | ||    |||    | |  | ||  || |||| || |   | ||      |   |||  |       ||  || |     |||  || |      |  ||||| |         |||||| ||||| ||||| ||  | ||||||||||| ||||||||||| |||||||| || || || ||||| || || ||  |||| || |||||||| 
gtagtatttttgctatcaattcttttagggttagttgtatttacaaagaaaatgacatctttagagctggcactgactaatagttt-ctcact-gctgattatattttttttataaaactttaccaccatttttgtagtaggactcgtacattctctcttcatggttttttaattgtcatgcagGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcg-tacttgcttgctggttgtga-ctgttgcgggagtgttatga--tgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
         |     | |   || |||| |  ||| |   |  || |  | |  ||  || |  |||         |   || |  | || ||  |    || |     |     ||| | |   ||||  | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || || || ||||||||||||||||| |||||||| 
-------gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagt-gtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                       ||| || |     ||||| |   || |      ||     | ||     | | ||||    | |   ||  | ||||| |||     | ||| |||   || |  |||| ||||| ||  | || || || |||||||||||||| || ||||  |||||||||||||| |||||||| ||||||||||||||||| 
-----------------------gtt-tgctatcaagtggcttttctgttattcactttcttttctt-----aatattataggtcagctaagcaggatgttgttgc----atgttatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgtta--ttgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                        |  |    |   |     || | | |  ||  || |  ||  ||    | | || | ||  |   |    | ||  |  |  |  |    | || | |||||| ||||| || || ||  | ||||| || || |||||||| || ||||| || |||||||| || || ||||| || ||||||||||||||||| 
------------------------tcattccaatttggttgataatagat-actcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                       |    | ||| | || | | |   | ||  |      || |  |||    ||||   | ||  | | ||   | |||   |||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || || || || || || |||||||| 
---------------------------------------gtacgcatgcattcttgctcttttttttctgt-----tttttttgc----gagtcgctcttgctcaagacttgcttt--tgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 9

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtg-gagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                                      |   |      ||   |   | || |     | || ||||   | ||  | | ||   | |||   |||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || || || || || || |||||||| 
------------------------------------------------------gtacgcatgcattcttgctctcttttttctttttgcgagtcgctcttgctcaagacttgcttt--tgcagGTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                                       |||| |   ||||     |  ||||| ||    || |   ||    |||          ||| |||||||  | || || || ||||| |||||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||| ||||| |||||||| 
-------------------------------------------------------gttg-gctcgttgtttttgccttatggtggctgggcgctcataaagttgga-------cttg-ggcagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAG

upper sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 8

gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA
                                                       |||| |   ||||     |  ||||| ||    || |   ||    |||          ||| | |||||  | || || || ||||| |||||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||| || || |||||||| 
-------------------------------------------------------gttg-gctcgttgtttttgccttatggtggctgggcgctcataaagttgga-------cttgcg-cagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|162249128|gb|FC420379.1|FC420379

EST:     CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG                         GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTAC
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC

EST: gi|162249101|gb|FC420378.1|FC420378

EST:     CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG                         GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTAC
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC

EST: gi|18339293|gb|BJ171320.1|BJ171320

EST:     GTAGATCAATTGGTGGAGATTATTAAG                         GTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
genomic: GTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC

EST: gi|162165970|gb|FC341801.1|FC341801

EST:     CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAG                         GTGTTGGGGACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTAC
genomic: CTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 17

CCTCTGTTCCCCGGAGAGAGTGGAGTAGATCAATTGGTGGAGATTATTAAGgtagggcaca ... tttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cgggagtgttatgatgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA