1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgccccctaacctacttccgtagagcttttcttattttgtgctttggttctagaaggtttcacgcgcatttttagaaggtttaaagagagttgctcatttgtgtaatatgcataaaacatgttgagtttgtatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCCTTGCCCTGCTGCATGGCGAGAAATTCAGCTATGACCTTGCTCGAGATCT
species | Physcomitrella patens |
transcript | PP1S570_1V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGG GTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCCEST: gi|100388379|gb|BY951981.1|BY951981
genomic: TATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGGgtatgccccc ... tatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCC
EST: TGTTAACATATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGG GTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCCEST: gi|162152064|gb|FC328459.1|FC328459
genomic: TGTTAACATATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGGgtatgccccc ... tatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCC
EST: TGTTAACATATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGG GTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCC
genomic: TGTTAACATATATGCTTTCGGTGAACGTTACACTGATATAGCTTCTTTGGgtatgccccc ... tatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCC
gagagttgctcatttgtgtaatatgcataaaacatgttgagtttgtatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCCTTGCCCTGCTGCATGGCGAGAAATTCAGCTATGACCTTGCTCGAGATCT
taatatgcataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccccctaacctacttccgtagagcttttcttattttgtgctttggttctagaaggtttcacgcgcatttttagaaggtttaaagagagttgctcatttgtgtaatatgcataaaacatgttgagtttgtatgtgacagGTGTATTAGCTAAGTATACAGGAGGACAGGTTTGTTATTATCCTGCATTCCTTGCCCTGCTGCATGGCGAGAAATTCAGCTATGACCTTGCTCGAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC