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...tggtgcttattagtaatacgtgttcgctttggttagaatagatgtacttcgtacttgttccacacgaatttaggattgatgcaaccctgttattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCCGAGGAGACAAGTCATGGTGAGTTTCAGACGCGGTGGAAACTGAGAGAAA
species | Physcomitrella patens |
transcript | PP1S56_221V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTGAGGGAGCTCGA GATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCCEST: gi|208367624|gb|DC943971.1|DC943971
genomic: AAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTGAGGGAGCTCGAgtacgtcaaa ... tattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCC
EST: AAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTGAGGGAGCTCGA GATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCCEST: gi|37851558|gb|BJ609566.1|BJ609566
genomic: AAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTGAGGGAGCTCGAgtacgtcaaa ... tattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCC
EST: AATTCATTGCGCTCGGGACAAAGCTGGGGAATATTATTGAGGGAGCTCGA GATGATATCCACACAGTGTTTTATGCNTGGGCCATGCAACAAGAGAGTCCCEST: gi|208370160|gb|DC951759.1|DC951759
genomic: AATTCATTGCGCTCGGGACAAAGCT-GGGAATATTATTGAGGGAGCTCGAgtacgtcaaa ... tattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCC
EST: AANTCATTGCGCTCGGGACAAAGCTGGGGAATATTATTGAGGGAGCTCGA GATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCC
genomic: AATTCATTGCGCTCGGGACAAAGCT-GGGAATATTATTGAGGGAGCTCGAgtacgtcaaa ... tattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCC
acttcgtacttgttccacacgaatttaggattgatgcaaccctgttattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCCGAGGAGACAAGTCATGGTGAGTTTCAGACGCGGTGGAAACTGAGAGAAA
gattgat putative branch site (score: 7)
ccctgtt putative PPT
ttattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgcttattagtaatacgtgttcgctttggttagaatagatgtacttcgtacttgttccacacgaatttaggattgatgcaaccctgttattttgtagGATGATATCCACACAGTGTTTTATGCCTGGGCCATGCAACAAGAGAGTCCCGAGGAGACAAGTCATGGTGAGTTTCAGACGCGGTGGAAACTGAGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca