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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgacttctacatgtctgtcaagttgaaatgctatgtggatatgcaaaatcccataaccttgtatagtgcctctaatttgattgtttcctcttttagGTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGGCTTGGACCATCTCTGCTGGGCATCGCACCGTACATCGCTCTAAATTTCT

Basic information

species Physcomitrella patens
transcript PP1S52_69V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162211342|gb|FC387572.1|FC387572
EST:     TCCAACTACCAGATCTATGGGTCAG                         GTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG
genomic: TCCAACTACCAGATCTATGGGTCAGgtatatttga ... cctcttttagGTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG
EST: gi|67698876|gb|BJ959109.1|BJ959109
EST:     TTTTGCGACTGCGGCTGGCTGTGGATCCAACTACCAGATCTATGGGTCAG                         GTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG
genomic: TTTTGCGACTGCGGCTGGCTGTGGATCCAACTACCAGATCTATGGGTCAGgtatatttga ... cctcttttagGTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG
EST: gi|67570072|gb|BJ942896.1|BJ942896
EST:     GGATCCAACTACCAGATCTATGGGTCAN                         GTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG
genomic: GGATCCAACTACCAGATCTATGGGTCAGgtatatttga ... cctcttttagGTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaaatcccataaccttgtatagtgcctctaatttgattgtttcctcttttagGTGGTTGGAACAATGCTTCGAGAGGAGGGGTTGAAGTCTTTCTACAAAGGGCTTGGACCATCTCTGCTGGGCATCGCACCGTACATCGCTCTAAATTTCT
                                       ttgtttcctctttt  CT-rich tract
                               taatttgattgttt  TA-rich tract