1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagattcctctttcgaatgttagttgcaacgtctatgctgctctgcttctatagcctgagtctaggatatgtagatatgtatggcgcaagaatcaatgaaagtagatatacccgcacctgactgattcttgtgaatctagaaagcttagtcaccttacgaaagcaagtgtggtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAGGTGGAGTTCGGGTTGCCTGATCTTGAAAGTCGAACCCAAATTTTCAAG
species | Physcomitrella patens |
transcript | PP1S49_256V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67720356|gb|BJ970615.1|BJ970615
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67727435|gb|BJ977694.1|BJ977694
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|37834307|gb|BJ592319.1|BJ592319
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|208361197|gb|DC954303.1|DC954303
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67725511|gb|BJ975770.1|BJ975770
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67578758|gb|BJ950925.1|BJ950925
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67726155|gb|BJ976414.1|BJ976414
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|208380596|gb|DC919368.1|DC919368
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|37839264|gb|BJ597272.1|BJ597272
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|37832375|gb|BJ590387.1|BJ590387
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTNTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACGTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|67700123|gb|BJ960356.1|BJ960356
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAEST: gi|208400821|gb|DC925101.1|DC925101
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
EST: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAG ACCAGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
genomic: GATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcc ... gtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAA
tcttgtgaatctagaaagcttagtcaccttacgaaagcaagtgtggtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAGGTGGAGTTCGGGTTGCCTGATCTTGAAAGTCGAACCCAAATTTTCAAG
accttac putative branch site (score: 29)
tttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcctctttcgaatgttagttgcaacgtctatgctgctctgcttctatagcctgagtctaggatatgtagatatgtatggcgcaagaatcaatgaaagtagatatacccgcacctgactgattcttgtgaatctagaaagcttagtcaccttacgaaagcaagtgtggtttgtatagACCTGATACTCTGGATCCAGCGCTTTTACGGCCAGGTCGGTTAGATCGTAAGGTGGAGTTCGGGTTGCCTGATCTTGAAAGTCGAACCCAAATTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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