1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgttcttcatctgtttgttagagttccatgttcattcgctgtaatgctgatcgaaccactaggtttgtggatttcatatatttcttgtacagcaccggtaataacctctatatttctgatacgcttcttgactttgttcttggtttaactggcatcgtacagATCCAGCGAGAGCTTCAACTACGCATTGAAGCTCAAGGTCTATCGCTGCAAAAAATGCTTGAACAACAGGCTAAATTAAACCACCCTGACTTGCCCAGTG
species | Physcomitrella patens |
transcript | PP1S490_9V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCAGATGGAAGTGCAGAAGAAGGTTCATGAGCAGCTTGAG ATCCAGCGAGAGCTTCAATTACGCATTGAAGCTCAAGGTCTATCGATGCAA
genomic: TGCAGATGGAAGTGCAGAAGAAGCTTCATGAGCAGCTTGAGgtctgttctt ... catcgtacagATCCAGCGAGAGCTTCAACTACGCATTGAAGCTCAAGGTCTATCGCTGCAA
ctatatttctgatacgcttcttgactttgttcttggtttaactggcatcgtacagATCCAGCGAGAGCTTCAACTACGCATTGAAGCTCAAGGTCTATCGCTGCAAAAAATGCTTGAACAACAGGCTAAATTAAACCACCCTGACTTGCCCAGTG
gtttaac putative branch site (score: 8)
tttaact TA-rich tract