1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtattctgtctgaaggtcccgtcaactctataattgccgtttcaattcctgttcattccacgttgatattcattttatgaattatctgcttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGACGAGGTCGCCACAGAACGTGCAGATGATCACGTTAAAGAGGATGCAGAA
species | Physcomitrella patens |
transcript | PP1S47_245V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATC GGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGAEST: gi|208396939|gb|DC915959.1|DC915959
genomic: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATCgtgcgtcttt ... ttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGA
EST: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATC GGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGAEST: gi|162259549|gb|FC435476.1|FC435476
genomic: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATCgtgcgtcttt ... ttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGA
EST: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATC GGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGA
genomic: GTTGAACGTGTCTTGTGCAAGGAGCTCAGCAAGAGTTGCAAAGAACTATCgtgcgtcttt ... ttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGA
attcctgttcattccacgttgatattcattttatgaattatctgcttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGACGAGGTCGCCACAGAACGTGCAGATGATCACGTTAAAGAGGATGCAGAA
cgttgat putative branch site (score: 18)
tctgctt putative PPT
ttgatattcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtattctgtctgaaggtcccgtcaactctataattgccgtttcaattcctgttcattccacgttgatattcattttatgaattatctgcttgcttatagGGAAACAGCAGAACCAGCGGATGACGATGATCTTGAAGATGAAGAAATCGACGAGGTCGCCACAGAACGTGCAGATGATCACGTTAAAGAGGATGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG