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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttggtacttctattgataacactagtgtcacagtattacagctggcttttggcaaactctattttttttccgtattattaatctacgaaggtagttcttataaaaggataataggcgagaacatttattatccaagtgactttctcgtgttccacttatgctacttctgcagGAAAAATCTCTGGATTTATCGCATCTATACCGCAAGCAGTTGCTGGTGGCCTGCTCGTTTTTATGTGGACATTACTGGCTGCCTTGGGCCTTTCGAATTT

Basic information

species Physcomitrella patens
transcript PP1S47_195V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835451|gb|BJ593463.1|BJ593463
EST:     GAGAGCTGTGGAGTTTGGGGCATGTGTGATGATTGGAATCTCTCTCGTTG                         GAAAAATCTCTGGATTTATCGCATCTATACCGCAAGCAGTTGCTGGTGGCC
genomic: GAGAGCTGTGGAGTTTGGGGCATGTGTGATGATTGGAATCTCTCTCGTTGgtaagttctt ... acttctgcagGAAAAATCTCTGGATTTATCGCATCTATACCGCAAGCAGTTGCTGGTGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacatttattatccaagtgactttctcgtgttccacttatgctacttctgcagGAAAAATCTCTGGATTTATCGCATCTATACCGCAAGCAGTTGCTGGTGGCCTGCTCGTTTTTATGTGGACATTACTGGCTGCCTTGGGCCTTTCGAATTT
                                           ctacttct  CT-rich tract
     atttattat  TA-rich tract