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...gtcagaagcgttggcattgattgccttagtggtttaaatttttaagtgtgatgtaatatccaatcatgctcactgatgaggatgaatttgtttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGATTGGAGCTGGTGGGGCTGGCAAAGCTCTGGCTTATGGAGCTAAAGAAAG
species | Physcomitrella patens |
transcript | PP1S47_18V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162229412|gb|FC405603.1|FC405603
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGGCA-GCTGTTTGTAGTGEST: gi|162169731|gb|FC345268.1|FC345268
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGG-CAAGCTGTTTGTAGTG
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162214492|gb|FC391459.1|FC391459
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162159094|gb|FC334889.1|FC334889
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162167336|gb|FC342324.1|FC342324
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: GAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
genomic: GAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
gtgtgatgtaatatccaatcatgctcactgatgaggatgaatttgtttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGATTGGAGCTGGTGGGGCTGGCAAAGCTCTGGCTTATGGAGCTAAAGAAAG
tttgtttctt CT-rich tract
atgtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaagcgttggcattgattgccttagtggtttaaatttttaagtgtgatgtaatatccaatcatgctcactgatgaggatgaatttgtttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGATTGGAGCTGGTGGGGCTGGCAAAGCTCTGGCTTATGGAGCTAAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA