1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatccacttaaaaacattttaaatccctaattttacactgacttttttctatgtattggaggtaatgatgacttggcgtggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGATCAGCTGTCAGACTTCCGCCCTGAAACTGGCATGATACTTGCAAACAG
species | Physcomitrella patens |
transcript | PP1S47_18V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGEST: gi|162209035|gb|FC385587.1|FC385587
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGEST: gi|162196537|gb|FC375451.1|FC375451
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGEST: gi|162214492|gb|FC391459.1|FC391459
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGEST: gi|162229411|gb|FC405602.1|FC405602
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGG
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGEST: gi|162209036|gb|FC385588.1|FC385588
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
EST: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATG AGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
genomic: TGGAGCTAAAGAAAGACATGCTCGAGTTGTTGTTGCTAATCGCAATTATGgtatccactt ... ggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTG
acactgacttttttctatgtattggaggtaatgatgacttggcgtggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGATCAGCTGTCAGACTTCCGCCCTGAAACTGGCATGATACTTGCAAACAG
cactgac putative branch site (score: 10)
ttttttctatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccacttaaaaacattttaaatccctaattttacactgacttttttctatgtattggaggtaatgatgacttggcgtggctttacagAGCGCGCAAAAGCACTAGCAGAGTCTGTGGGTGGGAAGGCAATAGAACTTGATCAGCTGTCAGACTTCCGCCCTGAAACTGGCATGATACTTGCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG