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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaggataaaggtggcctcagaaactcaatggatgacaaaaagtatgactgttggatggagagttcgttctttgtactaatacattctttctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCAACGATCATGTATACTAGTGGGACCACAGGGGAGCCAAAAGGTGTAATGT

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149873|gb|FC326196.1|FC326196
EST:     GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTG                         GGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA
genomic: GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTGgtttgtgttt ... ctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA
EST: gi|162194189|gb|FC371040.1|FC371040
EST:     GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTG                         GGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA
genomic: GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTGgtttgtgttt ... ctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA
EST: gi|162197005|gb|FC375217.1|FC375217
EST:     GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTG                         GGGAAAAAGAACAAATGTGACGTGACGCC
genomic: GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTGgtttgtgttt ... ctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCC
EST: gi|162151930|gb|FC328891.1|FC328891
EST:     GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTG                         GGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA
genomic: GTCAGGATGCGGGAGTCACGATCTACGCTTGGCAAGACTTCTTGGATCTGgtttgtgttt ... ctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactgttggatggagagttcgttctttgtactaatacattctttctgttttcagGGGAAAAAGAACAAATGTGACGTGACGCCACCAAAGAAAGAGGATTTGTCAACGATCATGTATACTAGTGGGACCACAGGGGAGCCAAAAGGTGTAATGT
                             tactaat  putative branch site (score: 1)
                                     cattctttctgttttc  CT-rich tract
                                taatacatt  TA-rich tract