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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggtaactgctgtttacgtgttcatggggattccaaaacttattcccttgcttcctgcattttcttgctatatttgtaacatctatggttgttttgtagGTGATCGTCAATGGTGGTATCAAGTATGCACGGAAGTCGCATATTTTCAGGTTGCACCTTCTCAAAACAGCATTCGCTCCCCTGGCGTAAATGAAAA

Basic information

species Physcomitrella patens
transcript PP1S477_5V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268380|gb|FC444149.1|FC444149
EST:     AAGCTACGACCAGGAGCATTTGAAACTCACTAAATCTGGACCAGATACTG                         GTGATCGTCAATGGTGGTATCAAGTATGCACGGAAGTCGCATATTTTCAGG
genomic: AAGCTACGACCAGGAGCATTTGAAACTCACTAAATCTGGACCAGATACTGgtgaataaat ... tgttttgtagGTGATCGTCAATGGTGGTATCAAGTATGCACGGAAGTCGCATATTTTCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttgcttcctgcattttcttgctatatttgtaacatctatggttgttttgtagGTGATCGTCAATGGTGGTATCAAGTATGCACGGAAGTCGCATATTTTCAGGTTGCACCTTCTCAAAACAGCATTCGCTCCCCTGGCGTAAATGAAAA
                             ttgtaac  putative branch site (score: 2)
                                            ttgtttt  putative PPT
                        tatatttgtaacat  TA-rich tract