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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacaacaaaggttttctggtgtggaagaagaaaatggcaacttctcccgaaatgctgtgctatttctgcccggttccgtttttaaacagacgttttggagATGGTCGCAAATATGAAGTTCGATGAAGAGCCAAACCACGGCAAGCTCGTTCTACTCTTCGATTCCATCTTGGGTCCTAATCCTACTGTGAGACCCATAA

Basic information

species Physcomitrella patens
transcript PP1S471_4V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S471_4V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 9
gacaacaaaggttttctggtgtggaagaagaaaatggc--aacttctcccgaaatgctgtgctatttctgcccggttccgtt-tttaaacagacgttttggagATGGTCGCAAATATGAAGTTCGATGAAGAGCCAAACCACGGCAAGCTCGTTCTACTCTTCGATTCCATCTTGGGTCCTAATCCTACTGTGAGACCCATAA
                  ||  |  | |  ||||||    || || |      ||| |  |  |||  ||  |  |  | || |||   |||  |      | | | |  |   | || |    ||  | | |   | |  | |  | |   | || || |      | | |||      ||| |    |||   ||      
------------------gttggacatattaaaatgattgaagttttattattatgttcaga-attgttggtctctaacattattttctcagGGGGAAAACAAAGGATTTCTGGTTTGTAAGAAGAAAATGGGAACATCTCCCGAGACCCTATGCTGCTTTAGTCCCCTACCTT-----TTAAGCAGTTTGTTGAAC------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgaaatgctgtgctatttctgcccggttccgtttttaaacagacgttttggagATGGTCGCAAATATGAAGTTCGATGAAGAGCCAAACCACGGCAAGCTCGTTCTACTCTTCGATTCCATCTTGGGTCCTAATCCTACTGTGAGACCCATAA
                                 tttttaaaca  TA-rich tract