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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgaatggatacgaagagggtgatattgtcgttacaattaggaggatattatgaaaggccgttcgtaagcctgacttatttcttatgcttgatttccagGTAGACCCGGGTTTGCCAAGAAGGCGGCGGACTTGTTTTTTCCTCCGGATTTTGCAGACGATTTTCCAGTTGCAATGCAG

Basic information

species Physcomitrella patens
transcript PP1S452_30V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 7
tgtgaatggatacgaagagggtgatattgtcgttacaattaggaggatattatgaaaggccgttcgtaagcctg--acttatttcttatgcttgatttccagGTAGACCCGGGTTTGCCAAGAAGGCGGCGGACTTGTTTTTTCCTCCGGATTTTGCAGACGATTTTCCAGTTGCAATGCAG
  |  ||  ||   |  |     | |   |   || ||||   |  || ||      ||    || |    |||  | |||| | |     ||  ||| |||| |  ||    ||| |||||||    || ||  | || |||||||| |||||||| || |||||||||||||| ||||||
-atagatatattgtattataactaaaccatttgtataatttt-atcatctttgatttggttaatcatccttctggaatttatctttccaaatttcttttcagGGAAGCCATCATTTTCCAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAG

upper sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 7
tgtgaatggatacgaagagggtgatattgtcgttacaattaggaggatattatgaaaggccgttcgtaag------cctgacttatttcttatgcttgatttccagGTAGACCCGGGTTTGCCAAGAAGGCGGCGGACTTGTTTTTTCCTCCGGATTTTGCAGACGATTTTCCAGTTGCAATGCAG
   || |   |||     | |  ||  |   |||||  ||   |   | || ||||   | |||| || |      ||||   ||  |   ||  ||  ||  |||| | ||| || ||| | |||||   ||| ||  | || |||||||| |||||||| || |||||||||||||||||||||
---gactcactactcttggtggaatcattatgttacctttt--attttgttttgaatt-ctgttcttatgtttattcctgttctaacttcaataatttcttagcagGGAAACCAGGATTTACAAAGAAACAGGCTGATCTTTTCTTTCCTCCAGATTTTGCTGATGATTTTCCAGTTGCAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattatgaaaggccgttcgtaagcctgacttatttcttatgcttgatttccagGTAGACCCGGGTTTGCCAAGAAGGCGGCGGACTTGTTTTTTCCTCCGGATTTTGCAGACGATTTTCCAGTTGCAATGCAG
                                                tttcc  CT-rich tract
                               ttatttcttat  TA-rich tract