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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacttctgtcataatttgttccggaagtctcagccaacttgtgagtccagaattgtgaaccgcatttacgactttaggatgtgcttttgcaacaataatgtgatacggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcagGTACCTGGAGCTCGTCGAAAAGCATGGTCTCGAAGTTTCACAGCCGTCGCTGGATTCCTCTCGTGGTACAACTTGGGCAATGACAAGGCATCGGGGCGAT

Basic information

species Physcomitrella patens
transcript PP1S448_20V6.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177786|gb|FC354620.1|FC354620
EST:     ATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAG                         GTACCTGGAGCTCGTCGAANAGCATGGTCTCGAAGTTTCACAGCCGTCGCT
genomic: ATCTTCATTTGGGATGAGGATCTTGATTTGACTCATTTCAATGCGCGGAGgtgagttact ... aaaactgcagGTACCTGGAGCTCGTCGAAAAGCATGGTCTCGAAGTTTCACAGCCGTCGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acggctttaatataacgaaggctttctaacgaaaataaaataaaaaaaactgcagGTACCTGGAGCTCGTCGAAAAGCATGGTCTCGAAGTTTCACAGCCGTCGCTGGATTCCTCTCGTGGTACAACTTGGGCAATGACAAGGCATCGGGGCGAT
                       ttctaac  putative branch site (score: 1)
                      tttctaacgaaaataa  TA-rich tract