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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacttacagcttatctttttcttcggtagagatcttacgtatgtatattgttggcgaatgcgtcaattgtatgtaatcctggtaggcgtcattccgttcgtactttgccagaacttacagcaagttctgtttctaacttttgaatgatcttacgcaccttggctttgaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCCTGAATTTCCACGCACATTTCCCCGTCCGACTTGAGTATTACAAATTCAC

Basic information

species Physcomitrella patens
transcript PP1S42_193V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162252374|gb|FC427287.1|FC427287
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|162173033|gb|FC349165.1|FC349165
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|67693971|gb|BJ954204.1|BJ954204
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|162176833|gb|FC353341.1|FC353341
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|208350468|gb|DC926201.1|DC926201
EST:     TTCTTGGAGAAACCATTTGGCGAATGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|67693854|gb|BJ954087.1|BJ954087
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|162176832|gb|FC353340.1|FC353340
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|208397845|gb|DC916166.1|DC916166
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|208351272|gb|DC921551.1|DC921551
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|162261957|gb|FC436816.1|FC436816
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|162252375|gb|FC427288.1|FC427288
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|18341516|gb|BJ173551.1|BJ173551
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
EST: gi|67694322|gb|BJ954555.1|BJ954555
EST:     TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCT---A-----                         -CTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC
genomic: TTCTTGGAGAAACCATTTGGCGAGTGCACGAAGAAGGCGCTGTGAGTAGAgtatttactt ... gaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttctgtttctaacttttgaatgatcttacgcaccttggctttgaatttccagACTAAACCCCAGAGATTCTCAAGCCTCGACAACCACTGAAGTCTACGCTCCTGAATTTCCACGCACATTTCCCCGTCCGACTTGAGTATTACAAATTCAC
                                                tttcc  CT-rich tract
                                          tttgaattt  TA-rich tract