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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtttcttctggttctaggacattgtatctgcaaagttttaattcatcgagagttctgcttgttcacatcactctttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG

Basic information

species Physcomitrella patens
transcript PP1S42_185V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828193|gb|BJ586205.1|BJ586205
EST:     ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAG                         ATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
genomic: ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAGgtaggtgttt ... ttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
EST: gi|162153817|gb|FC329948.1|FC329948
EST:     ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAG                         ATGTGGAGGCACTTTCACTGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
genomic: ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAGgtaggtgttt ... ttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
EST: gi|208364795|gb|DC954497.1|DC954497
EST:     ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAG                         ATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
genomic: ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAGgtaggtgttt ... ttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
EST: gi|37835031|gb|BJ593043.1|BJ593043
EST:     ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAG                         ATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
genomic: ACCAGTGGCTCAGCAGCTTCTACCTCTTAGTGTCGCTGCCTTATCACAAGgtaggtgttt ... ttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
EST: gi|162165905|gb|FC340956.1|FC340956
EST:     AGTGTCGCTGCCTTATCACAAG                         ATGTGGAGGCACTTTCACTGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT
genomic: AGTGTCGCTGCCTTATCACAAGgtaggtgttt ... ttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaagttttaattcatcgagagttctgcttgttcacatcactctttggatgcagATGTGGAGGCACTTTCACAGGAGGCTTGCAGTAACTTCATCTGGTGCTTGTCACAAAACAGTGACTGTTACCAACAATGG
      ttttaat  putative branch site (score: 3)
                                      tcactcttt  putative PPT
      ttttaattcat  TA-rich tract