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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgtttctggttttcctttatcgattgcggttgccatcgttgaacattttggtctctatttcagacatagaattatgctgtacggcgccgcgatctgatgtgagatacttggttcatttgcagAGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTCAGTGATGTCCAATCTGAACGGGAATGACGCAAACAATCATGTGTTTAGA

Basic information

species Physcomitrella patens
transcript PP1S41_228V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_228V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: AT3G23580.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttcgtttctggttttcctttatcgattgcggttgccatcgttgaacattttggtctctatttcagacatagaattatgctgtacggcgccgcgatctgatgtgagatactt--ggttcatttgcagAGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTCAGTGATGTCCAATCT---GAACGGGAATGACGCAAACAATCATGTGTTTAGA
||||||  ||   |   | ||  | |     |    |  | |   |   |    |  |     || |||   | || | | |    | |   | |    |  | | ||  |   ||  |    ||||||||||| || || || ||||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||    || || ||| |     || |      |  |   
gtaagta-gtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatctt-cattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846360|gb|BJ604368.1|BJ604368
EST:     AAGTACAACTCCCATAACCCTTTCGATTGGATGGAGCTCATTTCTTTACA                         AGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTC
genomic: AAGTACAACTCCCATAACCCTTTCGATTGGATGGAGCTCATTTCTTTACAgtaagttcgt ... tcatttgcagAGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaattatgctgtacggcgccgcgatctgatgtgagatacttggttcatttgcagAGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTCAGTGATGTCCAATCTGAACGGGAATGACGCAAACAATCATGTGTTTAGA
                        atctgat  putative branch site (score: 4)
                                            ttcattt  putative PPT
                                            ttcattt  TA-rich tract