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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcacgtgtgggttttgcatagatcatagtaaacatcttggtatttaaggaggaattataaggaatgaaaagtgacttgattacgatttcttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACG

Basic information

species Physcomitrella patens
transcript PP1S395_19V6.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100387138|gb|BY951537.1|BY951537
EST:     TTTGGTTGCACGAAAGCGCACTCA-TGCAGCACGGGACGGCGAGAAAGAT                         GGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
genomic: TTTGGTTGCACGAA-GCGCACTCAATGCAGCACGGGACGGCGAGAAAGATgtaagcgggt ... cttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
EST: gi|100445528|gb|CJ975677.1|CJ975677
EST:     TTTTGGTTGCACGAAGCGCACTCAATGCAGCACGGGACGGCGAGAAAGAT                         GGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
genomic: TTTTGGTTGCACGAAGCGCACTCAATGCAGCACGGGACGGCGAGAAAGATgtaagcgggt ... cttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggaggaattataaggaatgaaaagtgacttgattacgatttcttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACG
                              acttgat  putative branch site (score: 5)
                                          tttcttgt  putative PPT
         aattataa  TA-rich tract