1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatattaaaatcggtaacattttaagttgatattagtattctcagttcactacctacagatatctatgctttcaagggtgctaatttcttcaggttgtggcactattctgataaatctgtggtgcaaatttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCATGTCGCACATATGGTTGACAGCTGAACTTAAAAAATTGAAAGGTGCTAG
species | Physcomitrella patens |
transcript | PP1S395_19V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|162191986|gb|FC367199.1|FC367199
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|162268651|gb|FC445148.1|FC445148
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|37837034|gb|BJ595042.1|BJ595042
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: GGCTCACGAACTTATGCATGCTNGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCNTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|37822207|gb|BJ580273.1|BJ580273
genomic: GGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|162257370|gb|FC433453.1|FC433453
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCAEST: gi|162268650|gb|FC445147.1|FC445147
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
EST: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAG GAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
genomic: AGGGTCTATCTTGGCTCACGAACTTATGCATGCTTGGATTCGTCTGCAAGgtaatattaa ... tttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCA
atttcttcaggttgtggcactattctgataaatctgtggtgcaaatttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCATGTCGCACATATGGTTGACAGCTGAACTTAAAAAATTGAAAGGTGCTAG
tgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattaaaatcggtaacattttaagttgatattagtattctcagttcactacctacagatatctatgctttcaagggtgctaatttcttcaggttgtggcactattctgataaatctgtggtgcaaatttgctgcagGAAATTTTCGCCCCATGGCCCCTCATGTTGAGGAGGGTATCTGCCAAGTCATGTCGCACATATGGTTGACAGCTGAACTTAAAAAATTGAAAGGTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA