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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcccctacattttactatataacgagattctactactgctcattgtagattttgtgtttactcatcgacccgtttgtttttgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAAACGCCTCAATGCCATCAATGGTGATGGAGACGAGTAGATTAGCCAGTAT

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15729061|gb|BI741117.1|BI741117
EST:     CTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: CTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67723197|gb|BJ973456.1|BJ973456
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208374993|gb|DC956403.1|DC956403
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208362062|gb|DC950497.1|DC950497
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37830926|gb|BJ588938.1|BJ588938
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162279516|gb|FC455827.1|FC455827
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162245052|gb|FC422085.1|FC422085
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162208025|gb|FC384220.1|FC384220
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208380996|gb|DC919878.1|DC919878
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37831069|gb|BJ589081.1|BJ589081
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162216779|gb|FC393612.1|FC393612
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|19785563|gb|BQ040337.1|BQ040337
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162208344|gb|FC384656.1|FC384656
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37826504|gb|BJ584516.1|BJ584516
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|22491783|gb|BU051706.1|BU051706
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162266657|gb|FC442836.1|FC442836
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208380836|gb|DC923318.1|DC923318
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|18339121|gb|BJ171147.1|BJ171147
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162279515|gb|FC455826.1|FC455826
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162232207|gb|FC408056.1|FC408056
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208380825|gb|DC923307.1|DC923307
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208366885|gb|DC951372.1|DC951372
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162234040|gb|FC410722.1|FC410722
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208397433|gb|DC916359.1|DC916359
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37843754|gb|BJ601762.1|BJ601762
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGTTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162233763|gb|FC410029.1|FC410029
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162273382|gb|FC449831.1|FC449831
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208382321|gb|DC919309.1|DC919309
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67696812|gb|BJ957045.1|BJ957045
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37832212|gb|BJ590224.1|BJ590224
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67725048|gb|BJ975307.1|BJ975307
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208373996|gb|DC944729.1|DC944729
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162208343|gb|FC384655.1|FC384655
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|37826836|gb|BJ584848.1|BJ584848
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162215585|gb|FC391664.1|FC391664
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162245053|gb|FC422086.1|FC422086
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67725362|gb|BJ975621.1|BJ975621
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162239199|gb|FC416481.1|FC416481
EST:     GACCCTACTTCACAGAAGACTGAGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|67723671|gb|BJ973930.1|BJ973930
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTCCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
EST: gi|162275293|gb|FC451477.1|FC451477
EST:     GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAA                         GTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA
genomic: GACCCTACTTCACAGAAGACTGCGAAGAAGGCTCCTGCTGAAAAGAGGAAgtgagttccc ... tgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctcattgtagattttgtgtttactcatcgacccgtttgtttttgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAAACGCCTCAATGCCATCAATGGTGATGGAGACGAGTAGATTAGCCAGTAT
                                     tttgttttt  CT-rich tract
                                     tttgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcccctacattttactatataacgagattctactactgctcattgtagattttgtgtttactcatcgacccgtttgtttttgttgaacagGTGGAAGATTCAGAAGCTCACATATGAGGAACGCCAGGCTGCTTTGGTAAAACGCCTCAATGCCATCAATGGTGATGGAGACGAGTAGATTAGCCAGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA