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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacatgaacaatgatttaagttcgttcttctaaatattttcagcgcttccgatcaatacgagaggtcccatctctcatgtctgttcccagcttcctttgcaacgtattggtggtattttgcatgcttcttaatggtgtgcattgtgtctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTTATTAAGGAAGGAATCGAGGCTGATGATCTTGCGGACATGTACTCCAAAG

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374993|gb|DC956403.1|DC956403
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208362062|gb|DC950497.1|DC950497
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTNNNNNNNNNT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTT-CAGTGGATT
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGANAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|37830926|gb|BJ588938.1|BJ588938
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162279516|gb|FC455827.1|FC455827
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162245052|gb|FC422085.1|FC422085
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGA
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGA
EST: gi|162208025|gb|FC384220.1|FC384220
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208380996|gb|DC919878.1|DC919878
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGANNAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGANAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|37831069|gb|BJ589081.1|BJ589081
EST:     AGATTCNCCGGAAGTACATTTTGGGTGGTCATGTTGCCGNNTACATGAGG                         CTTTTGAAGGAAGATGAACNTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162216779|gb|FC393612.1|FC393612
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGANAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|19785563|gb|BQ040337.1|BQ040337
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162208344|gb|FC384656.1|FC384656
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATG
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATG
EST: gi|37826504|gb|BJ584516.1|BJ584516
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|22491783|gb|BU051706.1|BU051706
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162266657|gb|FC442836.1|FC442836
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208380836|gb|DC923318.1|DC923318
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGNAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|18339121|gb|BJ171147.1|BJ171147
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGGCTACATGAGG                         TTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162279515|gb|FC455826.1|FC455826
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162232207|gb|FC408056.1|FC408056
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208380825|gb|DC923307.1|DC923307
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208366885|gb|DC951372.1|DC951372
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAAGGAANATGAACNTGAAA-GTATCAATCCCACTTCA
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAA-GGAAGATGAACCTGAAAAGTATCAATCCCACTTCA
EST: gi|162234040|gb|FC410722.1|FC410722
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208397433|gb|DC916359.1|DC916359
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|37843754|gb|BJ601762.1|BJ601762
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162233763|gb|FC410029.1|FC410029
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162273382|gb|FC449831.1|FC449831
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGA
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGA
EST: gi|208382321|gb|DC919309.1|DC919309
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAANATGAA
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAA
EST: gi|19788241|gb|BQ040741.1|BQ040741
EST:     GATTCACCGGAAGTACATTTTGGGGTGG-CATGTTGCCGACTACATGAGG                         CTTTTTGA-GGAAGATGAACCTGAAAAGTATCAATCC
genomic: GATTCACCGGAAGTACATTTTGGG-TGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTT-GAAGGAAGATGAACCTGAAAAGTATCAATCC
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67696812|gb|BJ957045.1|BJ957045
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGGTGAACCTGAAAAGTATCAATCCCACTTCAGTGGATT-
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|37832212|gb|BJ590224.1|BJ590224
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67725048|gb|BJ975307.1|BJ975307
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208373996|gb|DC944729.1|DC944729
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGGTGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAA
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAA
EST: gi|162208343|gb|FC384655.1|FC384655
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|37826836|gb|BJ584848.1|BJ584848
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGANAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162215585|gb|FC391664.1|FC391664
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162245053|gb|FC422086.1|FC422086
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67725362|gb|BJ975621.1|BJ975621
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162239199|gb|FC416481.1|FC416481
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|67723671|gb|BJ973930.1|BJ973930
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
EST: gi|162275293|gb|FC451477.1|FC451477
EST:     AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGG                         CTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT
genomic: AGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 35

CGAGAAGCGCTTCGCCGGCTACAGCAAGGAAGACAAGTCCTTGAATGCCGAGATTCACCGGAAGTACATTTTGGGTGGTCATGTTGCCGACTACATGAGGgtaattacat ... ctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTTATTAAGGAAGGAATCGAGGCTGATGATCTTGCGGACATGTACTCCAAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtattggtggtattttgcatgcttcttaatggtgtgcattgtgtctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTTATTAAGGAAGGAATCGAGGCTGATGATCTTGCGGACATGTACTCCAAAG
                        tcttaat  putative branch site (score: 35)
                       ttcttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattacatgaacaatgatttaagttcgttcttctaaatattttcagcgcttccgatcaatacgagaggtcccatctctcatgtctgttcccagcttcctttgcaacgtattggtggtattttgcatgcttcttaatggtgtgcattgtgtctgtacgcagCTTTTGAAGGAAGATGAACCTGAAAAGTATCAATCCCACTTCAGTGGATTTATTAAGGAAGGAATCGAGGCTGATGATCTTGCGGACATGTACTCCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT