1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaagcacgattgtgtacacaaaactctcatttcctacaattgcacagcaaaaatgcactcgggtacatagatcaagatcggggactagaaagctctttatatcatatacgtgatatctaattgcttcccggtatgattctctgttgcgggtttattttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTACCCTGGTGACAAGAAGAGCCCCAAGGGAAAGCTCAG
species | Physcomitrella patens |
transcript | PP1S385_43V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAG TATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTAEST: gi|18339067|gb|BJ171093.1|BJ171093
genomic: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAGgtacaagcac ... attttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTA
EST: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAG TATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTAEST: gi|37843043|gb|BJ601051.1|BJ601051
genomic: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAGgtacaagcac ... attttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTA
EST: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAG TATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTAEST: gi|100411169|gb|BY992231.1|BY992231
genomic: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAGgtacaagcac ... attttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTA
EST: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAG TATGGTAGCGGACGTTC
genomic: AAGTTCCCCAAGGACGGGTCATCGCCGAAGTCGTTGAGATACATTGGAAGgtacaagcac ... attttttcagTATGGTAGCGGACGTTC
cgtgatatctaattgcttcccggtatgattctctgttgcgggtttattttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTACCCTGGTGACAAGAAGAGCCCCAAGGGAAAGCTCAG
atctaat putative branch site (score: 15)
tttattttttc putative PPT
tttattttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagcacgattgtgtacacaaaactctcatttcctacaattgcacagcaaaaatgcactcgggtacatagatcaagatcggggactagaaagctctttatatcatatacgtgatatctaattgcttcccggtatgattctctgttgcgggtttattttttcagTATGGTAGCGGACGTTCACAGAACTCTTCTATACGGAGGTATCTTTATGTACCCTGGTGACAAGAAGAGCCCCAAGGGAAAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA