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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcacgcccactgaaatttgcctggttccactaagatctgtagccaagttttagcttccatttagcgagaagggctgagttgtggatcggcagttgaagaatggtattagagtgcaaactaacaggtgctcaattgtgcagGTACGAAATACTAGGACATTCAATCGAACAGGCCAGTTAACAGGATACAAGCTCATGCCAGGCCGGAATTGTCTGCCTCTAGCTGGCCCTGATGCGAAGT

Basic information

species Physcomitrella patens
transcript PP1S36_16V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196470|gb|FC373577.1|FC373577
EST:     AGCTGCAGGCACAGCGTGATTGTAATGCACTGTCTCATCGCCATTGGATT                         GTACGAAATACTAGGACATTCAATCGAACAGGCCAGTTAACAGGATACAAG
genomic: AGCTGCAGGCACAGCGTGATTGTAATGCACTGTCTCATCGCCATTGGATTgtaagatcac ... aattgtgcagGTACGAAATACTAGGACATTCAATCGAACAGGCCAGTTAACAGGATACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggcagttgaagaatggtattagagtgcaaactaacaggtgctcaattgtgcagGTACGAAATACTAGGACATTCAATCGAACAGGCCAGTTAACAGGATACAAGCTCATGCCAGGCCGGAATTGTCTGCCTCTAGCTGGCCCTGATGCGAAGT
                              aactaac  putative branch site (score: 1)
                  tattaga  TA-rich tract