1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttttgatttctcgctcagtactatgccggctttgcaaaatgacatggtcaagcccacatggaaattgggttatggtgtgaggtgcttgttcttgtcagttcatcctcgtttggccattttgcatgtttccatgtgtcagaactatcggtgggtagtccataaagtaacgctgttctgacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCACTAGTGTTGGATACGACTACCTCCTTCGTCAG
species | Physcomitrella patens |
transcript | PP1S367_8V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|37846861|gb|BJ604869.1|BJ604869
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|67725480|gb|BJ975739.1|BJ975739
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: TTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|162224207|gb|FC399271.1|FC399271
genomic: TTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|208370718|gb|DC948255.1|DC948255
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|208360525|gb|DC950071.1|DC950071
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|67699473|gb|BJ959706.1|BJ959706
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: AAGCACNGGCATCGNTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|162242295|gb|FC418872.1|FC418872
genomic: AAGCACTGGCATCG-TTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|162208676|gb|FC385073.1|FC385073
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|208353007|gb|DC926072.1|DC926072
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGGTTCGTTGACCTATGNTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGGTTTCTTGTATAACTGGNATTCAAAGGAGGCAACCEST: gi|67726076|gb|BJ976335.1|BJ976335
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|208348734|gb|DC926409.1|DC926409
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|208357443|gb|DC953767.1|DC953767
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCEST: gi|37823603|gb|BJ581669.1|BJ581669
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
EST: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAG GTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
genomic: CAAGCACTGGCATCGTTTCGTTGACCTATGTTCAACGAGTGTCAGACAAGgtacttttga ... gacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACC
tgtgtcagaactatcggtgggtagtccataaagtaacgctgttctgacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCACTAGTGTTGGATACGACTACCTCCTTCGTCAG
ttctgac putative branch site (score: 26)
ataaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttgatttctcgctcagtactatgccggctttgcaaaatgacatggtcaagcccacatggaaattgggttatggtgtgaggtgcttgttcttgtcagttcatcctcgtttggccattttgcatgtttccatgtgtcagaactatcggtgggtagtccataaagtaacgctgttctgacgcttcagGTATCTTTGGCATCGGATTTCTTGTATAACTGGAATTCAAAGGAGGCAACCACTAGTGTTGGATACGACTACCTCCTTCGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG