Sequence
atgc intronic sequence ATGC exonic sequence...cggtaagggcaccggagtgtacctctctgggtgtttatcactggtaactttttacagacagagctgtgtgcgaacggcttacccttttttgcaattgcagATGGCCAGGCTCAATGATGGATTGGCTATGTTCGATGCCATTCTAATTGTACCCATGCTTCAAATTGTTTGGACTTTCTTCTCAATATTTACGGGTTTCA
Basic information
species | Physcomitrella patens |
transcript | PP1S35_249V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S35_249V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 9
cggtaagggcaccggagtgtacctctctgggtgtttatcactggtaactttttacagacagagctgtgtgcgaacggcttaccc---ttttttgcaattgcagATGGCCAGGCTCAATGATGGATTGGCTATGTTCGATGCCATTCTAATTGTACCCATGCTTCAAATTGTTTGGACTTTCTTCTCAATATTTACGGGTTTCA
| | | | | | | | ||| || | || | | | ||| ||| || | || | | | |||||||||| ||| | || || || ||| | |||| ||||| ||||| ||||| |||||| ||||||||| ||||||||||||||| || | ||| || ||
--agagagaaaaagaaaaaagaaacaaaaaaaaatcaatgctg-caattggttggacatgttaaattttgcaaacaactgatatatattatctccttctgcagATGGCAAGGTTGAACGAAGGGTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162159524|gb|FC336313.1|FC336313EST: GGTTCACGTACATTGNNNNNNNCTTATTTGTGGGAACAGCCTCATTTTGG ATGGCCAGGCTCAATGATGGATTGGCTATGTT
genomic: GGTTCACGTACATTGTTTTTTTCTTATTTGTGGGAACAGCCTCATTTTGGgtaagtggct ... gcaattgcagATGGCCAGGCTCAATGATGGATTGGCTATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactttttacagacagagctgtgtgcgaacggcttacccttttttgcaattgcagATGGCCAGGCTCAATGATGGATTGGCTATGTTCGATGCCATTCTAATTGTACCCATGCTTCAAATTGTTTGGACTTTCTTCTCAATATTTACGGGTTTCA
cttacccttttttgc CT-rich tract
tttttt TA-rich tract