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gtaacccctctatttaaccactttttatgaacattggtttaacgaactgaatatgtacgaacttttgctagttgttatcggccgccatgcttatatttatcgttctagttgaaaaccttatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG
species | Physcomitrella patens |
transcript | PP1S352_68V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAAT GTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAEST: gi|162186605|gb|FC363577.1|FC363577
genomic: CAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAATgtaacccctc ... tatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
EST: TCATCGCCACAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAAT GTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAEST: gi|162191186|gb|FC367864.1|FC367864
genomic: TCATCGCCACAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAATgtaacccctc ... tatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
EST: TCATCGCCACAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAAT GTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAEST: gi|162186604|gb|FC363576.1|FC363576
genomic: TCATCGCCACAGGACGTGCGCCATTCACTAAAGGCCTAGGACTTGAAAATgtaacccctc ... tatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
EST: GACTTGAAAAT GTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAEST: gi|67700043|gb|BJ960276.1|BJ960276
genomic: GACTTGAAAATgtaacccctc ... tatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
EST: CTAGGACTTGAAAAT GTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
genomic: CTAGGACTTGAAAATgtaacccctc ... tatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAA
gttatcggccgccatgcttatatttatcgttctagttgaaaaccttatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG
atgcttatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccctctatttaaccactttttatgaacattggtttaacgaactgaatatgtacgaacttttgctagttgttatcggccgccatgcttatatttatcgttctagttgaaaaccttatgtggcagGTGAACGTAGTTACGCAAAGGGGTTTTGTACCTGTGGACGAGCGAATGCAAGTGCTGGACGGGGAGGGAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA