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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccttttacttatcaagagcactttatctcactatgtgaagatacgtatctttcttcattgttctcgtatggaacttttaatgaagcataggtgttccatgtttatccatatcaaaatcaggttatccatctaactgttgttactggtgttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTCTCTGGTCAAATCATG

Basic information

species Physcomitrella patens
transcript PP1S341_73V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245385|gb|FC421287.1|FC421287
EST:     AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAG                         ACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
genomic: AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAGgttcctttta ... ttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
EST: gi|162245386|gb|FC421288.1|FC421288
EST:     AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAG                         ACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
genomic: AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAGgttcctttta ... ttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
EST: gi|162151891|gb|FC328137.1|FC328137
EST:     AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAG                         ACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
genomic: AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAGgttcctttta ... ttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
EST: gi|162173952|gb|FC349752.1|FC349752
EST:     AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAG                         ACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
genomic: AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAGgttcctttta ... ttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
EST: gi|208350104|gb|DC921908.1|DC921908
EST:     AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAG                         ACCGTAGATGAGCTNTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC
genomic: AATGTGGACAGCGCGGTGGATATTTCGAAATGACCAACTTTCACCCCAAGgttcctttta ... ttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccatatcaaaatcaggttatccatctaactgttgttactggtgttttgcccagACCGTAGATGAGCTCTACAAGGTTTCCTCCATAGCTCTGAGTCCAAATGTCTCTGGTCAAATCATG
                        atctaac  putative branch site (score: 2)
 ttttgccc  putative PPT
 tatcaaaat  TA-rich tract