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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggattttgtttgcacttctagatcatttttggcacatggattcaagaaactgaaaactaaaaactttatttcgtttattatatcttaatccatcttctaatgtcaagatgctctggaatttgcaagctttgtaatgttcttgatgcgattgtgttttccttgttagcagATTGAGAATACAGCTTGGAGTCAACATGCCTGCAAGAGCTGAATGTGTACATAAAAAGGACAGCGATGAATCGAAACCTTCTGAGGGACAACTTTTTGAA

Basic information

species Physcomitrella patens
transcript PP1S31_309V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154852|gb|FC331894.1|FC331894
EST:     TCTGTGGCCGGAGACCCTGAAGTTGATTTGCTGCTTCCAGGCACAGCTCG                         ATTGAGAATACAGCTTGGAGTCAACATGCCTGCAAGAGCTGAATGTGTACA
genomic: TCTGTGGCCGGAGACCCTGAAGTTGATTTGCTGCTTCCAGGCACAGCTCGgtgaggattt ... ttgttagcagATTGAGAATACAGCTTGGAGTCAACATGCCTGCAAGAGCTGAATGTGTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatttgcaagctttgtaatgttcttgatgcgattgtgttttccttgttagcagATTGAGAATACAGCTTGGAGTCAACATGCCTGCAAGAGCTGAATGTGTACATAAAAAGGACAGCGATGAATCGAAACCTTCTGAGGGACAACTTTTTGAA
                       tcttgat  putative branch site (score: 4)
                                       ttttccttgtt  putative PPT
             tttgtaat  TA-rich tract