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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA

Basic information

species Physcomitrella patens
transcript PP1S306_43V6.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                     ||  | || |    ||  |   |       | ||||  | || |||     |||    |||  ||  | | |   || | |  | |  | |||||||||||| || || ||  | || ||||||||||||||||||||||||||||| |||||||| || || ||||| ||||| || || |||||||| 
-------------------------------------gtaacatttttctatgatgtccta------aactgttctctcctgtgaccattgatcttgacaataacat-gtttagtcatagc-gccttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtg-gtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                          | ||||  || |     |||  | |   | |  |||  ||   | | ||   |  |   |||  |  |||     ||       |  |||||  |||| || || ||  | || || |||||    ||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| 
--------------------------------------gtaacatctgatttagtttagtggaatattattctatgtagtttcccccttttcttttagctcatgcaggagacttactgtacttcatt--cagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                     ||      |     ||| | ||| |||    ||  ||  |  |  |  | | || |   |  | |  | || |  |   | |  |   | ||||||  | || ||||| ||  | ||||| || || ||||||||||| ||||| || ||||||||||||||||| || || || ||||| |||||||| 
-------------------------------------gttagtgccaattctggtg-tttagtt---ggccttgcgagttgttcggaggtgcagaagtttgtaacattaa--aactgatcacacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                 ||      | |   |||   |  | | |     | | | || | |||     |     | | | |||  |||  |    |||||| |||| || || || || |||||||| ||||||||||| || || ||||| ||||| || ||||| |||||||| || ||||| |||||||| 
-------------------------------------------------gtaaattatat--cttgcttccatcgaaatcactccctttttgttgtttacctcctacttaactgactattctct----cagGTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G138676_T02 (Zea mays), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgtt----gaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                    | |   |||  ||  |  |  | ||     || || |  | | ||| |    |    ||  |  ||| | |     | |    | | | | | | |||||||||||| || || ||  | || ||||||||||||||||| || ||||| || ||||||||||| |||||||| || || || ||||||||||| 
----------------------------------gtgattttcttacgg--tatccatatgacc-atatctctactgttttgctgccttcttttgc-accatgacatattgaggcatagcatctgcatcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM5G835235_T02 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccaga--cgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA----
                                                   |  |  |||      |   |    |||||| | | |    ||  | | | | |     ||  ||   | ||  |  | ||||||  | || || || ||  | || || || || |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||||||     
--------------------------------------------------gtatcaattttacaaatttgtaaactatcttctgcata---gacataaattttgatcacacttgatttgattttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAGGTGT

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM5G835235_T04 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagac--gtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                   |  |  |||      |   |    |||||| | | |    ||  | | | | |     ||  ||   | ||  |  | ||||||  | || || || ||  | || || || || |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| 
--------------------------------------------------gtatcaattttacaaatttgtaaactatcttctgcata---gacataaattttgatcacacttgatttgattttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G024151_T01 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                  ||| |||||      |    ||   | |||| |    |  | ||   |      |       | | | ||  || ||||||||  | || || || ||  | || || || || |||||||| || || ||||||||||| ||||| ||||||||||| || ||||| |||||||| 
----------------------------------------------gtaattgtcggttctacaagcttgtgaattgtcttctata-gaagcataaaatctgatcacccctaaaatgattttgtatggcagGTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G129482_T01 (Zea mays), 3'ss of exon 3
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgt--ttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                               | |    ||  |      |||  |  |||      |   |    |||||| | | |    ||  | | | | |      |  ||  |  ||  |  | ||||||  | || || || ||  | || || || || |||||||| ||||| | ||||||||| ||||| ||||||||||| || ||||| |||||||| 
------------------------------cgtagaaatcatcaaggtagttatcaattttacaaatttgtaaactatcttctgcata---gacataaattttgatcacgcttgatttgattttgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTGCACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G472625_T01 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                |    ||    || |    ||  |   |    |  |  |   ||  |||  | |   | | |   || ||  | ||     ||||| | || || || || |||||||||||    ||||||||||| ||||| || ||||||| |||||| || || ||||| || ||||||||||| 
------------------------------------------------gtactgcaaaatgttccaaagtagacattctattcttctaccggg-gtgtttcttatggttatgtgatgtgcctgt-----agGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA----
                                                |    ||    || |    ||  |   |    |  |  |   ||  |||  | |   | | |   || ||  | ||     ||||| | || || || || |||||||||||    ||||||||||| ||||| || ||||||| |||||| || || ||||| || |||||||||||     
------------------------------------------------gtactgcaaaatgttccaaagtagacattctattcttctaccggg-gtgtttcttatggttatgtgatgtgcctgt-----agGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGGTAT

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                |  | ||    ||  ||  |  |  |  ||  | ||| | |     |    ||     |||    |   | | | |||   ||||| | || || || || |||||||||||   |||||||||||| ||||| || ||||||| |||||| || || ||||| || || |||||||| 
------------------------------------------------gtattgcaaaatg--ttccaaata-gaaattctattcctctgccgcgacgttact-tattggtatgtgatatgcctgt---agGTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA10G01280.1 (Glycine max), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgt---ttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                    | | || || |   ||  |    | |||||||| | |      | ||||   |   || |    ||     |||  ||   |    | |   |  |||||||| || || || ||  | || || ||||||||||||||||| || || || |||| ||| ||||||||||| || || ||||| |||||||| 
---------------------------------tgtgattgcattttctcttaactagcttgtttgtagatattcataatagttcccttgttatcttttcatacttctgaagaggtctgtgattcacatt-cagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA02G01220.1 (Glycine max), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgt--ggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                            |    ||   | | |  || | ||     ||   |||       |   ||  | ||||    |||  |    |||  | |   |   |   ||  | ||   |||||||| || || |||||  | || || |||||||| |||||||| || ||||| |||||||| ||||||||||| || || || || ||||| || 
---------------------------atccataataatagtccccttgttttatttttcccttttgcctcattcagtgccgtgttatctttgagtacttgtaaagag---atttgggattcacatg---cagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                 ||        || |   | | |||    || | |   |  |  || | | |     ||| ||    | | | | | |  ||| || | ||||| || ||  | || || ||   ||| ||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| 
-------------------------------------------------gtacttaacctgatccctcg-tgttccttcatctctcttctatatttaatttactagtttactcatc-tgtacatctaccagATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------------gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctg--ggttggcggtttggtttgtagctgtggtatcttgttcgt-gttggatgtgagtatggcgttgaccagacgtttc---cgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                               |  |   || |  |    | ||    ||   ||  ||  |   |||  | ||     |||  | |  | || |   | | | || || || |||   |   ||    |   |  |   |||     ||   |||||||||||| ||||| ||  | ||||||||||| ||||||||||| ||||||||||| || || ||||| || || ||  | || || |||||||| 
gtagtatttttgctatcaattcttttagggttagttgtatttacaaagaaaatgacatctttagagctggcactgactaatagtttctcactgctgattatattttttttataaaactttaccaccatttttgtagtaggactcgtacattctctcttcatggttttttaattgtcatgcagGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G06390.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttgg----tttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagac--gtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                             ||| |||  ||   |  | |  |   || |  |    ||| |  || ||||||     | |  |    |     | |  |  | |  | ||  | | || |||   ||||| | || || || |||||||| || ||    || ||||| |||||||||||||| || | ||| ||||||||||| || ||||| |||||||| 
-----------------------------gtg-aagtctcctttattagactaatggatgtgctcttttttgtctttggtattagactagaatctagtaaatatgttaccataagtacacttgctaccttgttttagGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttgg-cggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                  |    || |    | |||      | | ||| |||  | || || |||  ||    |  | |||| |  | ||  || | | |   || ||||   | | |         ||||||||| || ||||| ||  | || || ||||||||||||||||| ||||| ||||| || |||||||| || || ||  | || || |||||||| 
---------------cgtattcagtatagaagaaagcagtaacctttggattgctcagtctgatttcgag----gaaaccttggttttctt--atttcattt--gctttgatatgtcat---------gcagGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
gtgggacacacgtggtacacgttg---tttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggt-atcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
           ||   ||    ||    |||| || ||| |   |  |     ||  || ||||  |     |||   | ||| |        |   | || | |    | |||   || |||    | |   ||||  | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || || |||||||||||||| ||||| |||||||| 
-----------gtaaaactttctgagtcttgtatgcaagagaaacaat----attaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatg--tgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                    | | ||  ||  |  ||||  ||  |||  |  || |  | ||||  |  | | ||     | || | |  ||||     | |||    |||   || || |||| ||||| ||  | || || || |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||| |||||||| 
------------------------------------gtttgctatcaag--tggcttttctgttattcactttcttttcttaatattataggtcagctaagcaggatgttg-ttgcatgtt---atgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                         | |||  ||     |   | ||   ||  |  | | ||||||   | | |||||     | | ||  |||||  |    |  |         ||| | ||   ||||||||||| || || ||  | ||||| || |||||||||||||| || |||||||| || || || |||||||| || || ||||| |||||||| 
-------------------------tggtgctgagtctgcagttgctccttt--ccatcttgtttgtgattttagtatccatcccttatta-atgtgttttctacaatattttcttatttgcatg---cagGTTTTGGGCACCCCAACAAGAGAGGAAATTAAGTGCATGAATCCCAATTACACAGAATTTAAATTCCCACAAATTAAAGCCCACCCATGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                          |  |  || |    || | | || ||  ||||   | || |  | ||  |  |   |   || | | || ||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| 
---------------------------------------------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttg-cagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 9
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                          |  |  || |    || | |||| ||  | ||   || ||||  |   |||  ||    || |  | | |||||| || || || || ||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| 
---------------------------------------------------------gtacgcatgcattcttgctctcttttttctttt---tgcgagt-cgctcttgctcaagacttgc--ttttgcagGTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                                        |||    |||||  ||    |||   |   |||| | |    | |||    |  |||||||| | || || || ||||| |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||| ||||| |||||||| 
----------------------------------------------------------------------gttggctcgttgtttttgccttatggtggctgggcgctcat--aaagttggacttgggcagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAG

upper sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 8
gtgggacacacgtggtacacgttgtttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggtatcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                                                                        |||    |||||  ||    |||   |   |||| | |    | |||    |   ||||||| | || || || ||||| |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||| || || |||||||| 
----------------------------------------------------------------------gttggctcgttgtttttgccttatggtggctgggcgctcat--aaagttggacttgcgcagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389546|gb|BY989024.1|BY989024
EST:     CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG                         GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
genomic: CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGgtgggacaca ... cgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
EST: gi|67723790|gb|BJ974049.1|BJ974049
EST:     CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG                         GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAAC
genomic: CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGgtgggacaca ... cgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAAC
EST: gi|100449000|gb|CJ973299.1|CJ973299
EST:     CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG                         GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC
genomic: CTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGgtgggacaca ... cgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA
                            cgttgac  putative branch site (score: 4)
                                       cgtttcc  putative PPT