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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaattgattattattagttcatcagattcagcttttccacctctattgctgatatgtttaaggttactttagatttacttccgtttctggtgatttagGTATTGGCAACTGCTGTGGCCGTTGGCTACTTCACATTTCTAGTGTCTGGAGCATCCGGTCCTGCCGCAATTGTTATTGGAAATGGGCTTGCTCTTTCTT

Basic information

species Physcomitrella patens
transcript PP1S2_217V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256774|gb|FC432668.1|FC432668
EST:     AGAGACTGAGCTCCATGAAGAAGTATGTATTTGGATTTGGCTCAGCTCAG                         GTATTGGCAACTGCTGTGGCCGTTGGCTACTTCACATTTCTAGTGTCTGGA
genomic: AGAGACTGAGCTCCATGAAGAAGTATGTATTTGGATTTGGCTCAGCTCAGgtatctctct ... ggtgatttagGTATTGGCAACTGCTGTGGCCGTTGGCTACTTCACATTTCTAGTGTCTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgctgatatgtttaaggttactttagatttacttccgtttctggtgatttagGTATTGGCAACTGCTGTGGCCGTTGGCTACTTCACATTTCTAGTGTCTGGAGCATCCGGTCCTGCCGCAATTGTTATTGGAAATGGGCTTGCTCTTTCTT
   tgctgat  putative branch site (score: 3)
                    ttactttagattta  TA-rich tract