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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattgctgcttccttacaattatcgctgtttttgtgatgtttttggacttctttgatgccgataatcaaacactaatgactagtgaattgtatactcttttgtcacatgaactggattctagtttttatcgtttatatttggaggctatcttttgaaagtatagattttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG

Basic information

species Physcomitrella patens
transcript PP1S28_184V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172239|gb|FC348804.1|FC348804
EST:     TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCC                         GCTATGTGTGTCTGGGATCCCC
genomic: TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCCgtaagtattg ... ttttcgacagGCTATGTGTGTCTGGGATCCCC
EST: gi|100452665|gb|CJ975383.1|CJ975383
EST:     TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCC                         GCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
genomic: TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCCgtaagtattg ... ttttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
EST: gi|208398246|gb|DC912287.1|DC912287
EST:     TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCC                         GCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
genomic: TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCCgtaagtattg ... ttttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
EST: gi|100445020|gb|BY964319.1|BY964319
EST:     TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCC                         GCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
genomic: TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCCgtaagtattg ... ttttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
EST: gi|100434800|gb|BY960838.1|BY960838
EST:     TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCC                         GCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG
genomic: TGTCTAATTTGATCCCGAACGCTAGTCCAGAAGCAATCAATCTGATATCCgtaagtattg ... ttttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttttatcgtttatatttggaggctatcttttgaaagtatagattttcgacagGCTATGTGTGTCTGGGATCCCCGGAAAAGGCCGACGGCAGCACAAGCATTGCAACATCCATTTTTTCAG
                                             ttttc  CT-rich tract
     ttatcgtttatattt  TA-rich tract