1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaaaagaattgtctcatcgctagatgtcccgtaagattttcaagagcattatcagtctattgctgcagcccaagcactggcagagtgctaaattaggttattttgctcactgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCGTGCTGTTGCACTATGGCATTCAGACCATTCGAAAGCATATCGTAGGTAA
species | Physcomitrella patens |
transcript | PP1S279_43V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTG TGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCGEST: gi|37850072|gb|BJ608080.1|BJ608080
genomic: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTGgtaagaaaaa ... ctgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCG
EST: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTG TGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCGEST: gi|37853533|gb|BJ611541.1|BJ611541
genomic: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTGgtaagaaaaa ... ctgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCG
EST: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTG TGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCG
genomic: CTAAGTGCTATCAGTGTCCAGAGGCCAGTTAGCGTGGACGCATCCAAGTGgtaagaaaaa ... ctgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCG
gcagcccaagcactggcagagtgctaaattaggttattttgctcactgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCGTGCTGTTGCACTATGGCATTCAGACCATTCGAAAGCATATCGTAGGTAA
tgctcac putative branch site (score: 2)
taaattaggttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaaagaattgtctcatcgctagatgtcccgtaagattttcaagagcattatcagtctattgctgcagcccaagcactggcagagtgctaaattaggttattttgctcactgaatgcagTGGTCATCGTTTTTGATACTTGCTCAACGCTGTGTAAGTTTCGACCCCTCGTGCTGTTGCACTATGGCATTCAGACCATTCGAAAGCATATCGTAGGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT