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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttctttctggattttgattgttctggacctcgacgagttactgttcttggattgtgtctgaatttttctcccttatgtgtgaagcttgataatgaatcagtttattcgttttttgaaaattaattcaaaaattgttatttgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGTATCAGGATCTTATGGCCGCTGGAATCATCGACCCTGCCAAGGTCGTTA

Basic information

species Physcomitrella patens
transcript PP1S276_75V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178480|gb|FC354204.1|FC354204
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37847188|gb|BJ605196.1|BJ605196
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162176319|gb|FC353504.1|FC353504
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162270365|gb|FC447065.1|FC447065
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGTTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162170396|gb|FC346788.1|FC346788
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162157273|gb|FC332907.1|FC332907
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162178479|gb|FC354203.1|FC354203
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|67692782|gb|BJ953015.1|BJ953015
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162169599|gb|FC345539.1|FC345539
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37828443|gb|BJ586455.1|BJ586455
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162249948|gb|FC427049.1|FC427049
EST:     AAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37822400|gb|BJ580466.1|BJ580466
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162169794|gb|FC346150.1|FC346150
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162192274|gb|FC367799.1|FC367799
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162176318|gb|FC353503.1|FC353503
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37832140|gb|BJ590152.1|BJ590152
EST:     GTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCNTGCNTTCGGTTACAACGCTGCCACAGGTGA
genomic: GTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCC-TGCCTTCGGTTACAACGCTGCCACAGGTGA
EST: gi|37823462|gb|BJ581528.1|BJ581528
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162170395|gb|FC346787.1|FC346787
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162179963|gb|FC356034.1|FC356034
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162191286|gb|FC366860.1|FC366860
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|18338788|gb|BJ170813.1|BJ170813
EST:     AGTTGTTCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162191910|gb|FC366915.1|FC366915
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37823879|gb|BJ581945.1|BJ581945
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162153112|gb|FC329518.1|FC329518
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162186624|gb|FC363596.1|FC363596
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162185157|gb|FC362291.1|FC362291
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162169600|gb|FC345540.1|FC345540
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162160104|gb|FC335974.1|FC335974
EST:     TGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: TGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162192275|gb|FC367800.1|FC367800
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|208395400|gb|DC924468.1|DC924468
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162187014|gb|FC363420.1|FC363420
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162160105|gb|FC335975.1|FC335975
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|67694684|gb|BJ954917.1|BJ954917
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162190349|gb|FC365363.1|FC365363
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162190350|gb|FC365364.1|FC365364
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162150108|gb|FC326821.1|FC326821
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAA                         GTGTTGGCTAATGAAAACCCTGCCTTCGGNTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37832053|gb|BJ590065.1|BJ590065
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37835833|gb|BJ593845.1|BJ593845
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|162150107|gb|FC326820.1|FC326820
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
EST: gi|37850696|gb|BJ608704.1|BJ608704
EST:     AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAG                         GTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG
genomic: AGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 13

GTTGGTTCAGAAATTGTGAGGCGGGCTTTGAGTTACCCTTTGAAGTTGATCGCCAAAAATGCCGGTGTGAATGGAAGCGTCGTAGTTGAGAAGgttagttctt ... tgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGTATCAGGATCTTATGGCCGCTGGAATCATCGACCCTGCCAAGGTCGTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcagtttattcgttttttgaaaattaattcaaaaattgttatttgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGTATCAGGATCTTATGGCCGCTGGAATCATCGACCCTGCCAAGGTCGTTA
      tttattcgttttttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagttctttctggattttgattgttctggacctcgacgagttactgttcttggattgtgtctgaatttttctcccttatgtgtgaagcttgataatgaatcagtttattcgttttttgaaaattaattcaaaaattgttatttgattgacagGTGTTGGCTAATGAAAACCCTGCCTTCGGTTACAACGCTGCCACAGGTGAGTATCAGGATCTTATGGCCGCTGGAATCATCGACCCTGCCAAGGTCGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA