1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaatgccgtcttcagaagaccatgtgtaaagtacgaatgtcttgtacagtaaaggtcgtattgcatcattcccacacataacatgctgttatctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACCATTATTGTGCAGTGTATGGTGGGATATTAGAAAGAATAGAGGTTTGCTG
species | Physcomitrella patens |
transcript | PP1S271_49V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTANCTGGCAAACT ---G-TTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACCEST: gi|208374444|gb|DC940717.1|DC940717
genomic: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAAACTgtaagtgtaa ... atctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACC
EST: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAAACT ACAGGTTTGATGTGGEST: gi|162240378|gb|FC419311.1|FC419311
genomic: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAAACTgtaagtgtaa ... atctgtgtagACAGGTTTGATGTGG
EST: GCTCAGCAACACCCTGAAGTCTGGGAAAAAGTAGCTGGCAAACT ACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACCEST: gi|208392443|gb|DC907920.1|DC907920
genomic: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAAACTgtaagtgtaa ... atctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACC
EST: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAA-CT ---G-TTTGATGTGGANGAGTTTGANCTTGGGAATTTGGCACTTCACA-CC
genomic: GCTCAGCAACACCCTGAAGTCCGGGAAAAAGTAGCTGGCAAACTgtaagtgtaa ... atctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACC
acagtaaaggtcgtattgcatcattcccacacataacatgctgttatctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACCATTATTGTGCAGTGTATGGTGGGATATTAGAAAGAATAGAGGTTTGCTG
acataac putative branch site (score: 8)
ataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgccgtcttcagaagaccatgtgtaaagtacgaatgtcttgtacagtaaaggtcgtattgcatcattcccacacataacatgctgttatctgtgtagACAGGTTTGATGTGGAGGAGTTTGAACTTGGGAATTTGGCACTTCACAACCATTATTGTGCAGTGTATGGTGGGATATTAGAAAGAATAGAGGTTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatgc