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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaaactcttttcttccttgcaagtgccccgaagtggatagtaatctcaaatattccaagcttatggctgaaagcgttacactgatatgtgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362855|gb|DC950805.1|DC950805
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208365873|gb|DC947755.1|DC947755
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208354504|gb|DC953868.1|DC953868
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208386860|gb|DC953513.1|DC953513
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208371335|gb|DC944499.1|DC944499
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208368949|gb|DC955034.1|DC955034
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208375077|gb|DC956445.1|DC956445
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208371762|gb|DC951796.1|DC951796
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208355378|gb|DC949858.1|DC949858
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208362144|gb|DC954311.1|DC954311
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67720675|gb|BJ970934.1|BJ970934
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208351103|gb|DC921349.1|DC921349
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67720645|gb|BJ970904.1|BJ970904
EST:     CAGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208358571|gb|DC946532.1|DC946532
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67725270|gb|BJ975529.1|BJ975529
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208373640|gb|DC952465.1|DC952465
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208366254|gb|DC943814.1|DC943814
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208367547|gb|DC955699.1|DC955699
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208353738|gb|DC949772.1|DC949772
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208361562|gb|DC950292.1|DC950292
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208389599|gb|DC945823.1|DC945823
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTTCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208387246|gb|DC945545.1|DC945545
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67723866|gb|BJ974125.1|BJ974125
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208391971|gb|DC949434.1|DC949434
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208382500|gb|DC923170.1|DC923170
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208353564|gb|DC946344.1|DC946344
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|37824503|gb|BJ582569.1|BJ582569
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208358965|gb|DC950142.1|DC950142
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67724238|gb|BJ974497.1|BJ974497
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208369883|gb|DC944249.1|DC944249
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208381292|gb|DC919182.1|DC919182
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208392829|gb|DC957096.1|DC957096
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67724236|gb|BJ974495.1|BJ974495
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208360610|gb|DC957849.1|DC957849
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208359304|gb|DC954199.1|DC954199
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208362640|gb|DC943783.1|DC943783
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208388440|gb|DC957050.1|DC957050
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208400316|gb|DC924954.1|DC924954
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67726169|gb|BJ976428.1|BJ976428
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208369501|gb|DC931697.1|DC931697
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208369250|gb|DC944567.1|DC944567
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208346009|gb|DC921254.1|DC921254
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCNTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67703874|gb|BJ964107.1|BJ964107
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208368881|gb|DC947439.1|DC947439
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67720132|gb|BJ970391.1|BJ970391
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208394053|gb|DC957134.1|DC957134
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208356029|gb|DC946203.1|DC946203
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208372589|gb|DC944596.1|DC944596
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCANTCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67726447|gb|BJ976706.1|BJ976706
EST:     CGGAACGCTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208391916|gb|DC949379.1|DC949379
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208372250|gb|DC948053.1|DC948053
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208366641|gb|DC955661.1|DC955661
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208368096|gb|DC947656.1|DC947656
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         NCGGTTATTCCTAAGGAGANCAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67728284|gb|BJ978543.1|BJ978543
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208362514|gb|DC943741.1|DC943741
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|37830045|gb|BJ588057.1|BJ588057
EST:     CGGAGCGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208369879|gb|DC944245.1|DC944245
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208361228|gb|DC957697.1|DC957697
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208349007|gb|DC921695.1|DC921695
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208353341|gb|DC946289.1|DC946289
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCGTCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208361060|gb|DC946693.1|DC946693
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208397218|gb|DC920861.1|DC920861
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208365847|gb|DC955450.1|DC955450
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208396763|gb|DC924347.1|DC924347
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67726352|gb|BJ976611.1|BJ976611
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208386921|gb|DC956918.1|DC956918
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67725837|gb|BJ976096.1|BJ976096
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67728022|gb|BJ978281.1|BJ978281
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67727088|gb|BJ977347.1|BJ977347
EST:     CGGAACGTTTCCCCATCTTCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTNCCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208365798|gb|DC947736.1|DC947736
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|37824007|gb|BJ582073.1|BJ582073
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67728208|gb|BJ978467.1|BJ978467
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208394129|gb|DC957210.1|DC957210
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|67725278|gb|BJ975537.1|BJ975537
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|37837585|gb|BJ595593.1|BJ595593
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208377437|gb|DC927083.1|DC927083
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208368387|gb|DC955556.1|DC955556
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208364353|gb|DC950654.1|DC950654
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
EST: gi|208360763|gb|DC946473.1|DC946473
EST:     CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG                         ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC
genomic: CGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 23

GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAGgtaaaacatt ... tgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaaatattccaagcttatggctgaaagcgttacactgatatgtgctttacagACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG
                                   cactgat  putative branch site (score: 23)
     aatatt  TA-rich tract