1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagcagattaatctgtttgtttttttgtcgtctcaatttgaattttgaattttttttctttcttgtgacaaaaacaaacatttttttttctattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACATCTGGTGATGGAGTTTCACCTTTTTTGCAACTGCCTCATTTTAGTGAAG
species | Physcomitrella patens |
transcript | PP1S241_31V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG GCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACAEST: gi|67569617|gb|BJ942441.1|BJ942441
genomic: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAGgtattgttag ... tattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACA
EST: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG GCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACAEST: gi|162191838|gb|FC367987.1|FC367987
genomic: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAGgtattgttag ... tattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACA
EST: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG GCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACAEST: gi|162224033|gb|FC400391.1|FC400391
genomic: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAGgtattgttag ... tattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACA
EST: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAG GCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACA
genomic: GGTTGCGACCTGCTCTTGGTGTTATGGAACTCTCTCAAAGTATCACACAGgtattgttag ... tattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACA
tgaattttttttctttcttgtgacaaaaacaaacatttttttttctattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACATCTGGTGATGGAGTTTCACCTTTTTTGCAACTGCCTCATTTTAGTGAAG
catttttttttctatt CT-rich tract
aaaaacaaacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcagattaatctgtttgtttttttgtcgtctcaatttgaattttgaattttttttctttcttgtgacaaaaacaaacatttttttttctattttgaagGCTGTTCCATTGAGTGCGAGAAAGGCATCTGGAGTATCTGCGGCAGCGACATCTGGTGATGGAGTTTCACCTTTTTTGCAACTGCCTCATTTTAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA