1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacatctagacaattgagatcgcagtaaactgtgcatctcgagcctttttatttttaaagtataatatgtatatttttgatttgttgaataaagttactattggctttaatgcaatatggaactggagagttcgtattatgtcgtggcgaaaaatactaattttagggtcgtttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTACCTGCAGACTTAGTAGACCTGGCTGATAGGAGTTACGACTTTGAGGACC
species | Physcomitrella patens |
transcript | PP1S240_91V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAG AGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTAEST: gi|162170636|gb|FC347132.1|FC347132
genomic: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAGgtacatctag ... ttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTA
EST: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAG AGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTAEST: gi|162257149|gb|FC432609.1|FC432609
genomic: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAGgtacatctag ... ttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTA
EST: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAG AGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTA
genomic: TGGAGTGCAGGCATTTGCTGTCTAGGATATTTGTTGCTAACCCAGCCAAGgtacatctag ... ttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTA
gagttcgtattatgtcgtggcgaaaaatactaattttagggtcgtttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTACCTGCAGACTTAGTAGACCTGGCTGATAGGAGTTACGACTTTGAGGACC
tactaat putative branch site (score: 21)
aaaaatactaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatctagacaattgagatcgcagtaaactgtgcatctcgagcctttttatttttaaagtataatatgtatatttttgatttgttgaataaagttactattggctttaatgcaatatggaactggagagttcgtattatgtcgtggcgaaaaatactaattttagggtcgtttgtgtgcagAGAATCAACATCCAAGAAATTAAGAACCACGAGTGGTTTTTGAAAAATTTACCTGCAGACTTAGTAGACCTGGCTGATAGGAGTTACGACTTTGAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT