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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA

Basic information

species Physcomitrella patens
transcript PP1S227_66V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 3'ss of exon 7
aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
        |  |  | ||| ||  |   |||  |   |    ||||||||        |     | ||||    ||  |   |  | ||| |    ||||||||||||  ||||||| ||||||||||||||  | |||||||| ||||||||||| ||||| ||||| |||   || ||    || ||  | ||     
--------gtatgctccgtgct--cataactagattgatcaattattttc-----atctttcatggcttttaacctaatatttccgcaaacttg--gtagATGGAAGAGCGAATGACACTGTGCAACATGGTTATTGAAGCTGGTGGCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA14G40570.1 (Glycine max), 3'ss of exon 8
-----aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
      |    |         |  | ||| ||  |         | | | | || |              |  || ||        |||||    |      |||||||||||  | |||||  ||||||||||||| || |||||||| || |||||||| ||||||||||||||   ||| ||    || ||  | ||     
gaaaacacaagtaaacgggccctaaatttttcttcaatctcggaactctttcttttgattataaataaaattgttttggta-----atttgttcctcttggatagATGGAAGAACGGATGACATTGTGCAACATGGTTGTTGAAGCTGGTGGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA17G37540.1 (Glycine max), 3'ss of exon 8
-------aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
       ||      |    ||   |  ||  || |   || |||   ||| |||| ||            ||  || ||        |||||    |      |||||||||||  | |||||  ||||||||||||| || |||||||| || |||||||| ||||||||||||||   ||| ||    || ||  | ||     
aaaacacaagtaaacgggccataaatttttcttcaatctca-gaactctttcttttttattataaataaaagttgttttggta-----atttgttcctcttggataGATGGAAGAACGGATGACATTGTGCAACATGGTTGTTGAAGCTGGTGGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGA-----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA20G34160.1 (Glycine max), 3'ss of exon 9
aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
    ||  || |  ||   ||  | |   ||      |  || | || | |  |    |  |  | ||||   | || || |||       ||  ||||||||||||| || ||||| ||||||||||||||  | ||||||||||| || || ||  ||||| ||||||||   || ||    || ||| | ||     
----gtatgcatacttttaacactgttttctttctatatggtatgttatttgcactagta-taagacttttgaattgttgtattg------tat-tgtagATGGAAGAAAGGATGACACTGTGCAACATGGTTATAGAAGCTGGAGGGAAAAACGGTATTGTTGCTGCTGATAGAACCACATACAAATACCTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: AT4G13430.1 (Arabidopsis thaliana), 3'ss of exon 8
----------------aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggc----ttgctgggtctttctgactgctgcatttggaaattacatg-----tagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
                 ||      | ||||  || | |||||   |  |   | |  ||| |  ||  |       ||        ||| | | || |    ||| |  ||   ||     ||||||||||| ||||||||  ||||||||||||| ||||||||||| || |||||||| ||  | ||| ||||||| || ||    || ||  | ||     
gtaagaaatcattctatatttcctacattatgggtcccttctcttatagaaataaaaattaatagctgcatatgatgttatcattgatttataaatggt-tgcttgaatcttttttggctgctagATGGAAGAAAGAATGACATTGTGCAACATGGTTGTGGAAGCTGGGGGAAAGAATGGTGTCATCCCTCCTGATGCGACGACATTAAATTATGTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv08s0056g01640.t01 (Vitis vinifera), 3'ss of exon 8
------------------------aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctt---tctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
                            |      |     ||  ||   |   |        | ||| | |  |  |      |||| |  |   | | | || |  |||              |||||||||| || |||||  | ||||||||||| || ||||||||||| |||||||| |||||||||||||||   || ||    |||||| | ||     
gtaagttcacttttacagatcttcccctgcaaaaatctcaagtcattctgcatttctttctgaaatttgtataatcaaactgcactggattatggttttaattgttttattcctctcaactgaaaagATGGAAGAAAGGATGACATTATGCAACATGGTTGTTGAAGCTGGAGGAAAGAATGGTGTTGTTCCTGCTGATAGTACTACACATAAGTACCTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv05s0049g01980.t01 (Vitis vinifera), 3'ss of exon 8
-----------------aatcgttggctt----tattcgtac--tttctcgactgcacgaagagtttattttctagaggcttgctgggtc---tttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
                  ||| |   ||     |||    |    |  ||   |    |  || ||| |||  |       | |||| ||    || ||| || | ||||     |        |||||||||| ||||||||  | |||||||||||  | |||||||| || |||||||| ||||| |||||||||   || ||    |||||| | ||     
gtaggtgcacttttatagatcttccactgcaagtatctaaatcactgttcatttctgtgtggaatttgtttaatcagcctgttctggatcacagttttgattgtttcattgttctaaactgaaaagATGGAAGAAAGAATGACATTATGCAACATGGTTATTGAAGCTGGGGGAAAGAATGGTGTTGTCCCTGCTGATAGTACTACACATAAGTACCTTGAG----

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ16666 (Selaginella moellendorffii), 3'ss of exon 7
aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgc--atttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
                                     ||  ||| ||| |      ||    | |  | ||   ||| |    |  | | || | || | ||||||| |||||||||||  ||||||| ||||   | |||||||||||||| ||||||||||| ||||| ||||     |||   |  ||  || |     
----------------------------------gtcagtatttttttccccttacctcatcgagattgtccacctgatttcgagatcggaact-cacgcagATGGAGGACAGAATGACGTTGTGCAATATGGCGATTGAAGCTGGAGGCAAAAATGGCGTTGTGCCTGCGGATGAAGTCACCTATAGTTATCTGAAG----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7207714|gb|AW561711.1|AW561711
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162179912|gb|FC355983.1|FC355983
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162198076|gb|FC372103.1|FC372103
EST:     GTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: GTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|100388195|gb|BY951797.1|BY951797
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162213332|gb|FC389620.1|FC389620
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|7286764|gb|AW599251.1|AW599251
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|100413212|gb|BY956563.1|BY956563
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162243292|gb|FC415641.1|FC415641
EST:     TGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: TGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162243293|gb|FC415642.1|FC415642
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162213331|gb|FC389619.1|FC389619
EST:     GCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: GCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162261369|gb|FC437802.1|FC437802
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|67725705|gb|BJ975964.1|BJ975964
EST:     TGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACAT-GTCGTGGAAGCTGGAGGCAAG
genomic: TGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162262854|gb|FC439273.1|FC439273
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162159195|gb|FC334366.1|FC334366
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162267272|gb|FC442060.1|FC442060
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162222837|gb|FC399299.1|FC399299
EST:     CGGCACTGCCGTTGATGCTATGACG                         ATGGAGGACAGAATGACTCTGTGCAACAT-GTCGTGGGAAGCTGGAGGCAA
genomic: CGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGT-GGAAGCTGGAGGCAA
EST: gi|162267271|gb|FC442059.1|FC442059
EST:     TACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: TACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162172982|gb|FC347892.1|FC347892
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162258438|gb|FC434445.1|FC434445
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|100410814|gb|BY956200.1|BY956200
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|67727259|gb|BJ977518.1|BJ977518
EST:     CAANTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|19778198|gb|BQ039280.1|BQ039280
EST:     CAACTTACATAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162222838|gb|FC399300.1|FC399300
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAGGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|19782687|gb|BQ039891.1|BQ039891
EST:     CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: CAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
EST: gi|162199218|gb|FC375054.1|FC375054
EST:     GTCGGCACTGCCGTTGATGCTATGACG                         ATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG
genomic: GTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 19

ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTGTCGGCACTGCCGTTGATGCTATGACGgttagtagtc ... ttacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA
                       ttctgac  putative branch site (score: 19)
                                          aaattacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatcgttggctttattcgtactttctcgactgcacgaagagtttattttctagaggcttgctgggtctttctgactgctgcatttggaaattacatgtagATGGAAGACAGAATGACTCTGTGCAACATGGTCGTGGAAGCTGGAGGCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - -ctgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca