1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...caggttctattttgttgcagattaatgatgtcattatgttgtggagcatttgaagaacaagctcgtttcttactgcgtatcacttttcgtcttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
species | Physcomitrella patens |
transcript | PP1S222_130V6.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG GATCATTCGGGACATCATCCAAAATCATCTCGTGCAGEST: gi|162149665|gb|FC326716.1|FC326716
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
EST: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG GATCATTCGGGGACATCATCCAAAATCATCTCGTGCAGGTTCTGTGTCEST: gi|162162513|gb|FC338607.1|FC338607
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGG-ACATCATCCAAAATCATCTCGTGCAGGTTCTGTGTC
EST: -GGAGGACTTTGGAAACTCA-GGACGAGGTGGTTATTTTGATGAGTATGG GATCATTCGGGACATCATCCANAATCATCTC
genomic: AGGAGGACTTTGGAA-CTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTC
gcatttgaagaacaagctcgtttcttactgcgtatcacttttcgtcttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
ttcttac putative branch site (score: 2)
tcacttttcgtctt putative PPT
ttattgta TA-rich tract