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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggttctattttgttgcagattaatgatgtcattatgttgtggagcatttgaagaacaagctcgtttcttactgcgtatcacttttcgtcttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153066|gb|FC330096.1|FC330096
EST:     AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
EST: gi|162165174|gb|FC341676.1|FC341676
EST:     AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
EST: gi|162263641|gb|FC440125.1|FC440125
EST:     AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
EST: gi|162149665|gb|FC326716.1|FC326716
EST:     AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGGACATCATCCAAAATCATCTCGTGCAGGTTCTGTGTC
genomic: AAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGG-ACATCATCCAAAATCATCTCGTGCAGGTTCTGTGTC
EST: gi|162162513|gb|FC338607.1|FC338607
EST:     -GGAGGACTTTGGAAACTCA-GGACGAGGTGGTTATTTTGATGAGTATGG                         GATCATTCGGGACATCATCCANAATCATCTC
genomic: AGGAGGACTTTGGAA-CTCAAGGACGAGGTGGTTATTTTGATGAGTATGGgtaagtgatc ... cttattgtagGATCATTCGGGACATCATCCAAAATCATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttgaagaacaagctcgtttcttactgcgtatcacttttcgtcttattgtagGATCATTCGGGACATCATCCAAAATCATCTCGTGCAG
                     ttcttac  putative branch site (score: 2)
                                  tcacttttcgtctt  putative PPT
                                              ttattgta  TA-rich tract