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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgctagtccttttaacaggtttctatgattggatttgttacacccatattattgcaatttagtatttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGTGGACTTGTAGCAGGTGGCGTTGTCCCATCTCCCTTTGACTATGCCGATG

Basic information

species Physcomitrella patens
transcript PP1S21_270V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
gtgggttgctagtccttttaacaggtttctatgattggatttgttacacccatattattgcaatttagtatttgaaggatctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGTGGACTTGTAGCAGGTGGCGTTGTCCCATCTCCCTTTGACTATGCCGATG
                                                   || ||| |||    ||||   ||  | ||||      |   |||||    ||   | || ||||   |   ||   | |  |||||||||||||||| ||||| || || || || || ||||| ||||||||||| ||||| |||| ||| ||||| |||||||| ||||| ||||| ||||
-----------------------------------------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaatca---gtcaaataattcacttgtta-tgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223942|gb|FC398948.1|FC398948
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162196160|gb|FC374320.1|FC374320
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGC
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGC
EST: gi|162163180|gb|FC340234.1|FC340234
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162179305|gb|FC356254.1|FC356254
EST:     GTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: GTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162177205|gb|FC352634.1|FC352634
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162170818|gb|FC347432.1|FC347432
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162230450|gb|FC407391.1|FC407391
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCT
EST: gi|162179862|gb|FC355933.1|FC355933
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162204585|gb|FC381969.1|FC381969
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|22492390|gb|BU052313.1|BU052313
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162222160|gb|FC397388.1|FC397388
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162273886|gb|FC450025.1|FC450025
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162157150|gb|FC333720.1|FC333720
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162158553|gb|FC334556.1|FC334556
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162180035|gb|FC356106.1|FC356106
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162184252|gb|FC360493.1|FC360493
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAA
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAA
EST: gi|162199804|gb|FC376397.1|FC376397
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162176992|gb|FC353669.1|FC353669
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|208363337|gb|DC943559.1|DC943559
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAANGCGATTCTGCTCGCCGACATGGNCCCATATCAN
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGG-CCCATATCAG
EST: gi|100447569|gb|CJ971868.1|CJ971868
EST:     CTAGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162157748|gb|FC335462.1|FC335462
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162199622|gb|FC373274.1|FC373274
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162161888|gb|FC337964.1|FC337964
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162166993|gb|FC342455.1|FC342455
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162199573|gb|FC373225.1|FC373225
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162179299|gb|FC356248.1|FC356248
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162164433|gb|FC341052.1|FC341052
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162188408|gb|FC364278.1|FC364278
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCT
EST: gi|162206365|gb|FC382643.1|FC382643
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162219994|gb|FC395366.1|FC395366
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162167058|gb|FC342520.1|FC342520
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|100411150|gb|BY956345.1|BY956345
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162153713|gb|FC329116.1|FC329116
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|67569716|gb|BJ942540.1|BJ942540
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162196885|gb|FC375162.1|FC375162
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|100382988|gb|BY986984.1|BY986984
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCGGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162182206|gb|FC358221.1|FC358221
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162211794|gb|FC387458.1|FC387458
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCAT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCAT
EST: gi|162191214|gb|FC367892.1|FC367892
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162164431|gb|FC341050.1|FC341050
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162265229|gb|FC441316.1|FC441316
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162154208|gb|FC330339.1|FC330339
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCA
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCA
EST: gi|162178246|gb|FC354652.1|FC354652
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162180258|gb|FC355263.1|FC355263
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162234140|gb|FC410354.1|FC410354
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162184985|gb|FC362431.1|FC362431
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|100390305|gb|BY952713.1|BY952713
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162183896|gb|FC360202.1|FC360202
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162225773|gb|FC400713.1|FC400713
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|161978982|gb|EE296273.1|EE296273
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162243208|gb|FC415560.1|FC415560
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162151096|gb|FC327121.1|FC327121
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162195879|gb|FC375612.1|FC375612
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|161970270|gb|EE296251.1|EE296251
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162162498|gb|FC339216.1|FC339216
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATC
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATC
EST: gi|162180523|gb|FC356165.1|FC356165
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162195138|gb|FC368813.1|FC368813
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162192085|gb|FC367298.1|FC367298
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162170542|gb|FC347675.1|FC347675
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162280199|gb|FC456008.1|FC456008
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAG
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCA-Ggtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAG
EST: gi|162181276|gb|FC357045.1|FC357045
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162231324|gb|FC407059.1|FC407059
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAA                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162178476|gb|FC354200.1|FC354200
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|100374630|gb|BY985864.1|BY985864
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162166235|gb|FC342633.1|FC342633
EST:     TGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: TGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
EST: gi|162166332|gb|FC342925.1|FC342925
EST:     CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAG                         GTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT
genomic: CTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 234

ATGGAGAAGAGCGCAACACTCTTCAGACCAAAGTTGATAGTCGCTGGTGCTAGTGCTTATGCCCGCCATTACGACTACGCTCGCATGCGCCAGgtgggttgct ... ttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGTGGACTTGTAGCAGGTGGCGTTGTCCCATCTCCCTTTGACTATGCCGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgaacttgttaatcccccgtttgaaaactcacgactggctgttttttttagGTTTGTGACAAGCAAAAGGCGATTCTGCTCGCCGACATGGCCCATATCAGTGGACTTGTAGCAGGTGGCGTTGTCCCATCTCCCTTTGACTATGCCGATG
                             aactcac  putative branch site (score: 234)
                                          ctgtttttttt  putative PPT
                                           tgtttttttta  TA-rich tract