Sequence
atgc intronic sequence ATGC exonic sequence...atcgaaagctgctcttgggccttggttttgaaggtcgtgtcctaaatgttttcaatttattttttctttctgaaccttgcgtttgttacatggtgtgtagGGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATATTGCCAATTGTTGGAAACGCCGCAGAACATGCGAGTGCTATTATGTTTG
Basic information
species | Physcomitrella patens |
transcript | PP1S21_141V6.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S21_141V6.3 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ33760 (Selaginella moellendorffii), 3'ss of exon 4
atcgaaagctgctcttgggccttggttttgaaggtcgtgtcctaaatgttttcaatttattttttctttctgaaccttgcgtttgttacatgg-tgtgtagGGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATATTGCCAATTGTTGGAAACGCCGCAGAACATGCGAGTGCTATTATGTTTG
|| ||| ||| | ||| ||| | | || | | ||| || ||||||| | |||||| | || | || ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| |||||||
---------------------------------------------gtgattttgattatctctttgattcg----ttctcacttctcgcttggctgcacagGGTGCCGCCGACAGTTGGAACATCCCTGTGGCTTTTATCAGCGTGATCATCTTGCCAATTGTTGGAAATGCGGCAGAGCATGCGAGCGCTATAATGTTTG
upper sequence: PP1S21_141V6.3 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ12361 (Selaginella moellendorffii), 3'ss of exon 4
atcgaaagctgctcttgggccttggttttgaaggtcgtgtcctaaatgttttcaatttattttttctttctgaaccttgcgtttgttacatgg-tgtgtagGGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATATTGCCAATTGTTGGAAACGCCGCAGAACATGCGAGTGCTATTATGTTTG
|| ||| ||| | ||| ||| | | || | | ||| || ||||||| | |||||| | || | || ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| |||||||
---------------------------------------------gtgattttgattatctctttgattcg----ttctcacttctcgcttggctgctcagGGTGCCGCCGACAGTTGGAACATCCCTGTGGCTTTTATCAGCGTGATCATCTTGCCAATTGTTGGAAATGCGGCAGAGCATGCGAGCGCTATAATGTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100420664|gb|BY993453.1|BY993453EST: TGACTCTCTTTATCTCCATACTGTCGGAATATTTGGTTGATGCAATCGAG GGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATA
genomic: TGACTCTCTTTATCTCCATACTGTCGGAATATTTGGTTGATGCAATCGAGgtatgctttt ... tggtgtgtagGGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttttcaatttattttttctttctgaaccttgcgtttgttacatggtgtgtagGGTGCTTCAACTGCATGGAACGTACCCATTGCATTTATAAGCGTGATCATATTGCCAATTGTTGGAAACGCCGCAGAACATGCGAGTGCTATTATGTTTG
ttcaatttattttttc TA-rich tract