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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actcgtcactttgccggccgtcagtaatcgactatgttttctggaaatatttggcctggtttttatcttacaactctatgatcattttactcactgccagGATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCATGTTTGTG

Basic information

species Physcomitrella patens
transcript PP1S21_141V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100420664|gb|BY993453.1|BY993453
EST:     ACGCCGCAGAACATGCGAGTGCTATTATGTTTGCTCTCAAAGACAAGCTG                         GATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCCATGTT
genomic: ACGCCGCAGAACATGCGAGTGCTATTATGTTTGCTCTCAAAGACAAGCTGgtatgtcttc ... tcactgccagGATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCC-ATGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttggcctggtttttatcttacaactctatgatcattttactcactgccagGATATCTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCATGTTTGTG
                                          tactcac  putative branch site (score: 1)
                                       ttttactc  CT-rich tract
              tttttatcttacaa  TA-rich tract