1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtatttgcgaaagatgtttggtgtgaaacttttctaactgagcagcgtctgctccgtaacacagaccttgatttcaagtacttttaggaaattcacaccctatctcatttggatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGTGGTTCGGGTGTATGCTGAGGCTCAGACACAGAAAATCGCTGATTCTTT
species | Physcomitrella patens |
transcript | PP1S211_20V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGEST: gi|37822654|gb|BJ580720.1|BJ580720
genomic: TCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
EST: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGEST: gi|15730034|gb|BI741627.1|BI741627
genomic: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
EST: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGEST: gi|162175671|gb|FC351258.1|FC351258
genomic: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
EST: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGEST: gi|37834007|gb|BJ592019.1|BJ592019
genomic: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
EST: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGEST: gi|37837059|gb|BJ595067.1|BJ595067
genomic: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
EST: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGG AGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
genomic: TAAAGTTGCTTCTCCGCCTGCTCTTCAAGCTGCAATCGATTCGGCAGTGGgtgagtattt ... gatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACG
cttgatttcaagtacttttaggaaattcacaccctatctcatttggatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGTGGTTCGGGTGTATGCTGAGGCTCAGACACAGAAAATCGCTGATTCTTT
ccttgat putative branch site (score: 10)
tactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatttgcgaaagatgtttggtgtgaaacttttctaactgagcagcgtctgctccgtaacacagaccttgatttcaagtacttttaggaaattcacaccctatctcatttggatgctgcagAGAAGTATGAGGGAGGAAGGGCTTTTGTGCGACCATCAGGAACCGAAGACGTGGTTCGGGTGTATGCTGAGGCTCAGACACAGAAAATCGCTGATTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT