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gtaaacatctggttctgatgctgaagttttcttgcatcgtctgcttttcctagacatcatgcagttattgtgacattccattggttcattcacgaattctgatttgtttgaacttgactcatccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGATCCATCGTATTTGCCCAATA
species | Physcomitrella patens |
transcript | PP1S20_16V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAGTGCCGTGTACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAG GTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGEST: gi|67694426|gb|BJ954659.1|BJ954659
genomic: TTAGTGCCGTGTACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAGgtaaacatct ... catccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAG
EST: TGTACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAG GTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGEST: gi|208363930|gb|DC947202.1|DC947202
genomic: TGTACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAGgtaaacatct ... catccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAG
EST: CACCTACATGCTTGCC-AANCTGAGTGCAAG GTAGAA-TTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGEST: gi|161970273|gb|EE296246.1|EE296246
genomic: CACCTACATGCTTGCCAAACCTGAGTGCAAGgtaaacatct ... catccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAG
EST: ACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAG GTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAG
genomic: ACGGAGGCACCTACATGCTTGCCAAACCTGAGTGCAAGgtaaacatct ... catccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAG
attccattggttcattcacgaattctgatttgtttgaacttgactcatccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGATCCATCGTATTTGCCCAATA
ctcatcc CT-rich tract
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatctggttctgatgctgaagttttcttgcatcgtctgcttttcctagacatcatgcagttattgtgacattccattggttcattcacgaattctgatttgtttgaacttgactcatccaacagGTAGAATTTGATGAAATGGGTCAAGTTATGGGGGTTACTTCCGAGGGGGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGATCCATCGTATTTGCCCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA