1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttcaaatttttctatctttgtgctcacaaggttgtaagttgttaaaatgtgatgcttctggaagtgcttgatgtaattctcatgtatggactactagacaatgtatttggttttgttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGTATTGAAGAATGATGGCTGGATATTTGAGGTTTGAGCGATTAATTAGGT
species | Physcomitrella patens |
transcript | PP1S20_135V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAG GCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAEST: gi|37845067|gb|BJ603075.1|BJ603075
genomic: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAGgtatttcaaa ... gttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCA
EST: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAG GCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGEST: gi|37851659|gb|BJ609667.1|BJ609667
genomic: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAGgtatttcaaa ... gttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAG
EST: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAG GCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGEST: gi|162159369|gb|FC334650.1|FC334650
genomic: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAGgtatttcaaa ... gttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAG
EST: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAG GCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGEST: gi|162177594|gb|FC352452.1|FC352452
genomic: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAGgtatttcaaa ... gttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAG
EST: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAG GCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAG
genomic: CTCTTGGTGACCTTGGATGTGAGCCTATCCTTCACATGCGCCATTTCCAGgtatttcaaa ... gttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAG
gatgtaattctcatgtatggactactagacaatgtatttggttttgttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGTATTGAAGAATGATGGCTGGATATTTGAGGTTTGAGCGATTAATTAGGT
gcttgat putative branch site (score: 6)
ttttgttttc putative PPT
aatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcaaatttttctatctttgtgctcacaaggttgtaagttgttaaaatgtgatgcttctggaagtgcttgatgtaattctcatgtatggactactagacaatgtatttggttttgttttcacagGCTACTGGAGCCCTTCCTGAGGCATTGGTGCAACACATCTGCAGATGATAGTATTGAAGAATGATGGCTGGATATTTGAGGTTTGAGCGATTAATTAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA